| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522896
Identifier: 42522896
GI number: 42522896
Start: 1301754
End: 1302953
Strand: Direct
Name: 42522896
Synonym: Bd1377
Alternate gene names: NA
Gene position: 1301754-1302953 (Clockwise)
Preceding gene: 42522895
Following gene: 42522898
Centisome position: 34.41
GC content: 51.0
Gene sequence:
>1200_bases ATGAAAACATTGGGATTGTCTTTGTTCTTGATGGCAAGTTCTTCCTGGGCTTTGCCGTCCTATCAGGTGCCGGAAATGCA GGTGCGTGCGCACTATCGCAACACATTCAACTTGCCGCCTCTGACTTATCTGAGCAACACCTCGCCTTCCATTAATAACC ACGGTGATGTGACCTTTAAGTTGATGGCCGTGGATGGCACTCCCAATCAGGCCGTGTGGTACAAAGGCAAGAGTGATAGC AAATGGCAAATTGTCTTTGTGGCCCCCGAAGATCGTTATGTGTCAGATCCGTCTGTGAATGACCGCGGGGAAATCACTTA CAGCCCTTATACCGAAGTGATGAGTGATGGTCTGTTCGTGTTCGATACCAAATCTGGAACAACCATCGAAAAGCTGGCAG GTCCGGCCCATAAAATAGTTTTTATGGCGTATGTTCAAACTTTGAATGACGGCACCTCGGTGTTCCGAGGCATGGGGACA GATTTTGACCGTGGCTTCTATGAAGTGAACGGCGGTCTTAAAACCATTGCGATGGAAGGTCAGAGAAACTTTGGCACTCC TTCCGCTTATCTGTTTAAGCCGGCCGTGAATGATAAAAAGCACTGGGCCTTCAAGGTTCGGGTGGGTGAGCGTGGTGAAA TCGGCAATGAACAATCAGACCAGATCCTGCTGGTGAAGCCAACACCACAGGGATATGACAAGATCATCGTGGCTCAGGAC AACAAAGGCGACGTGAATTCTCCGTTCACCGGATTTGGTAACGGTGTGTCCATGGCTCAAAACGGCCTGGTGGCCTTTGT TGGTCACGATAAGAACAACAGGAAGTCCCTGGTGCTCTGGGAAAACGGCAGCATGACAACGCTGGTTCGTGAAGGGCAGG GCGGAATTTCTGAAATTGAGATGTTCTCTCCGAAAGTGAACTCCAGTGGGGTGGTGGCATTCCGTGCGAAAAATGAAAAA GGCCTGCGTGGGATTTATGTGGCCTCCAAGGACGGCGTCAAGCGTCTGATCGGCGAGGGCGACAGCATCCCGACAGATCT GGGGCCGGGGCAAATCCTGCAAAAGCAAGACTTCCCGGGCTTTGCCGGTGATATTGATATCAATGAAAAGAATGAGTTGG TCTTTGCCTGTGTGGTGGCCACCACCGACAATCAGATCACCGGAGATGCCGTTTACCGCATTTCGCCAGCGGGTCTTTAG
Upstream 100 bases:
>100_bases AGCTGGAAAAGATTCTAAAAAAATACAATCTTGAGGACTGGAACATCTTTGCTTTGTAGCAGTTTTTCGACATATGATTT TCATGGGAAATGGAGTTTCT
Downstream 100 bases:
>100_bases CGCGCACATTCCCGCAGCAAGCTGGCGCAGCGGTCCAGAATGGTGGCGCGGATTTTATCGCGCTGCTCTCGGAACTCGGG GTGCTGGCTGGTTTGCACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MKTLGLSLFLMASSSWALPSYQVPEMQVRAHYRNTFNLPPLTYLSNTSPSINNHGDVTFKLMAVDGTPNQAVWYKGKSDS KWQIVFVAPEDRYVSDPSVNDRGEITYSPYTEVMSDGLFVFDTKSGTTIEKLAGPAHKIVFMAYVQTLNDGTSVFRGMGT DFDRGFYEVNGGLKTIAMEGQRNFGTPSAYLFKPAVNDKKHWAFKVRVGERGEIGNEQSDQILLVKPTPQGYDKIIVAQD NKGDVNSPFTGFGNGVSMAQNGLVAFVGHDKNNRKSLVLWENGSMTTLVREGQGGISEIEMFSPKVNSSGVVAFRAKNEK GLRGIYVASKDGVKRLIGEGDSIPTDLGPGQILQKQDFPGFAGDIDINEKNELVFACVVATTDNQITGDAVYRISPAGL
Sequences:
>Translated_399_residues MKTLGLSLFLMASSSWALPSYQVPEMQVRAHYRNTFNLPPLTYLSNTSPSINNHGDVTFKLMAVDGTPNQAVWYKGKSDS KWQIVFVAPEDRYVSDPSVNDRGEITYSPYTEVMSDGLFVFDTKSGTTIEKLAGPAHKIVFMAYVQTLNDGTSVFRGMGT DFDRGFYEVNGGLKTIAMEGQRNFGTPSAYLFKPAVNDKKHWAFKVRVGERGEIGNEQSDQILLVKPTPQGYDKIIVAQD NKGDVNSPFTGFGNGVSMAQNGLVAFVGHDKNNRKSLVLWENGSMTTLVREGQGGISEIEMFSPKVNSSGVVAFRAKNEK GLRGIYVASKDGVKRLIGEGDSIPTDLGPGQILQKQDFPGFAGDIDINEKNELVFACVVATTDNQITGDAVYRISPAGL >Mature_399_residues MKTLGLSLFLMASSSWALPSYQVPEMQVRAHYRNTFNLPPLTYLSNTSPSINNHGDVTFKLMAVDGTPNQAVWYKGKSDS KWQIVFVAPEDRYVSDPSVNDRGEITYSPYTEVMSDGLFVFDTKSGTTIEKLAGPAHKIVFMAYVQTLNDGTSVFRGMGT DFDRGFYEVNGGLKTIAMEGQRNFGTPSAYLFKPAVNDKKHWAFKVRVGERGEIGNEQSDQILLVKPTPQGYDKIIVAQD NKGDVNSPFTGFGNGVSMAQNGLVAFVGHDKNNRKSLVLWENGSMTTLVREGQGGISEIEMFSPKVNSSGVVAFRAKNEK GLRGIYVASKDGVKRLIGEGDSIPTDLGPGQILQKQDFPGFAGDIDINEKNELVFACVVATTDNQITGDAVYRISPAGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43602; Mature: 43602
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLGLSLFLMASSSWALPSYQVPEMQVRAHYRNTFNLPPLTYLSNTSPSINNHGDVTFK CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEE LMAVDGTPNQAVWYKGKSDSKWQIVFVAPEDRYVSDPSVNDRGEITYSPYTEVMSDGLFV EEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHCCEEE FDTKSGTTIEKLAGPAHKIVFMAYVQTLNDGTSVFRGMGTDFDRGFYEVNGGLKTIAMEG EECCCCCCHHHHCCCHHHHEEEEHHHHHCCCHHHHHCCCCCCCCCEEEECCCEEEEEEEC QRNFGTPSAYLFKPAVNDKKHWAFKVRVGERGEIGNEQSDQILLVKPTPQGYDKIIVAQD CCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEEC NKGDVNSPFTGFGNGVSMAQNGLVAFVGHDKNNRKSLVLWENGSMTTLVREGQGGISEIE CCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEE MFSPKVNSSGVVAFRAKNEKGLRGIYVASKDGVKRLIGEGDSIPTDLGPGQILQKQDFPG EECCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCEECCCCCC FAGDIDINEKNELVFACVVATTDNQITGDAVYRISPAGL CCCEEECCCCCCEEEEEEEEECCCCCCCCEEEEEECCCC >Mature Secondary Structure MKTLGLSLFLMASSSWALPSYQVPEMQVRAHYRNTFNLPPLTYLSNTSPSINNHGDVTFK CCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEE LMAVDGTPNQAVWYKGKSDSKWQIVFVAPEDRYVSDPSVNDRGEITYSPYTEVMSDGLFV EEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHCCEEE FDTKSGTTIEKLAGPAHKIVFMAYVQTLNDGTSVFRGMGTDFDRGFYEVNGGLKTIAMEG EECCCCCCHHHHCCCHHHHEEEEHHHHHCCCHHHHHCCCCCCCCCEEEECCCEEEEEEEC QRNFGTPSAYLFKPAVNDKKHWAFKVRVGERGEIGNEQSDQILLVKPTPQGYDKIIVAQD CCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEEC NKGDVNSPFTGFGNGVSMAQNGLVAFVGHDKNNRKSLVLWENGSMTTLVREGQGGISEIE CCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEE MFSPKVNSSGVVAFRAKNEKGLRGIYVASKDGVKRLIGEGDSIPTDLGPGQILQKQDFPG EECCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCEECCCCCC FAGDIDINEKNELVFACVVATTDNQITGDAVYRISPAGL CCCEEECCCCCCEEEEEEEEECCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA