Click here to switch to the map view.

The map label for this gene is rbsB [C]

Identifier: 42522895

GI number: 42522895

Start: 1299964

End: 1301712

Strand: Direct

Name: rbsB [C]

Synonym: Bd1376

Alternate gene names: 42522895

Gene position: 1299964-1301712 (Clockwise)

Preceding gene: 42522894

Following gene: 42522896

Centisome position: 34.36

GC content: 51.57

Gene sequence:

>1749_bases
GTGAACACACTGGCTCTTTCCTTTTTCATGGCTCTGCTTCTGACTTCTTGGGTCAGTCAGGCCCGCACGTACAACGTCGC
CATTTTATACTGGAGCATGAAGATTCCCGGTCAGGTGGCCATGCGACAGGGGTTCGAAGAAGAGGTGGCAGCGTATAACA
AGGCCAATGAAGAAAACCAAATTAAATTAACTCCTTATGTGGCGGGTGAAGGCCGTGATGGTTTGCTCAGACAAATAGAG
CAGTTGGATCAGGCGGTAAAGTCCAAACCCGATGCTATCGTGATACAGCCGGCGGATATCACAATCCTGAGTCGAGGGGT
TCAGGAGGCCAACAGTAAGAACATCCCGGTCTTTGCTTATGACCAGTACATCATCAAAGCCAAACTGACCTCTTTCATCA
GCAGCGACAACTATCAGGCGGGGTGGGACAATGGTCTTTATATCGACAGTCAGTTTCCGCCGGAAAAAGTTTTAAGAATC
GTGCCTTTTGAATATTTCCGTGTGTCGGCGACGGTGGAGCGCATGGATGGTTTCTTCGACGCCCTTCGCAGCCGCAACCG
CAAGTTCACTGTTCTTGGTCATTTCGAGGCGGTGGAACCCGTGGGCGGTTTGAAAGCCGCTCAGGATTATCTGAAAAAAT
TCAAACGTGGCAGTGTGGATGTGATCTTCACCAACAATGACGGCGGAGGCCTGATCATTGTCAAAACCCTTTGGGATGCC
GGCCATAAGAAGCTGATTCATGCGACGGTGGATGGGGACCCGGCCTCCATTGAAAACATCAAGAGCAAAACACTGACGGT
GATTGACTCAGCACAATTCTGTGGTGAGCTGGGACGGGAAACGGCGCGCACGGTGGTTCAATTCTTCAAGAATGGAAAAG
TGGAGCCTGTGAAATTCATTCCGACATTCCCGGTCACACTGGAGTCCCTGAAATTCTATCCAGGCTGGATGGGGCGGCCC
ACGGAAAAAGTTCGATTCCAGTCCTTGCGGGACATCCATATCAAAGAGGCCAAAGCCGACGGCAAGCCCAAGCGCGGAGC
CATCATCAAAGTGGGACTGACTCCCTCTTGCCCCTATTTGTGTGAAATGGGTCCGGCGGGCTGGTCTGGCTATTTGTACG
ACATTCTTGAAAGTGCCGCCAAAGAAAGTGATTTCAAATTGGAGATCGTCAGCCTGCCCAGTGAAAAACTGCTGCCGGCT
CTGCAAAAGCAGCAGGTTCACTTTGTGATAAGCCCCATATCCAAGGTTCGTTATACTCCTGATCTGCGGGTCGTCGGCCC
GAAACTGGGAATGAGTCTTGCCGGCGCCCTGTTCACCCCCGGTGTAAAGCTGCAACTGGTGGATTCAGATTCATTGGCGG
ACAAACGCATTGTTTTTGCCCAGTTGGCCCATGAAAACCTCATGCAGCTGCCGCCGTCAGACTTTAACCGTTCGTTGAAA
ATCTCCGGCCGCGAGATCGGGGACCGCATGACCAAACTGATCGCCGAAAGACGGGTGGACCTGGCTTTGGGGGACTACAA
TGTTCTTCGCTATAATATGTTGCGCCGGCAACTGCTCAGCTTTGAAATTCAACCGACCTCTTTGGCCGGCTACAACGCGC
TTGTGCTGGTGGGACATCCTAAAGATCCAGAGTACGGCGAGCTGCCGTTGATCCTGAACAAGTGGTTCGATACTCACCGC
GCGTCAGGCAAGCTGGAAAAGATTCTAAAAAAATACAATCTTGAGGACTGGAACATCTTTGCTTTGTAG

Upstream 100 bases:

>100_bases
ACTGAGTATCTTCAGTGTTCCTGATTAAGTTTGCGAAATCATCAAGACGTCCCCAAGGTGAGAGCTGGTGGATTCAACTC
TGGATTTATAGAATCAGTTT

Downstream 100 bases:

>100_bases
CAGTTTTTCGACATATGATTTTCATGGGAAATGGAGTTTCTATGAAAACATTGGGATTGTCTTTGTTCTTGATGGCAAGT
TCTTCCTGGGCTTTGCCGTC

Product: putative ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MNTLALSFFMALLLTSWVSQARTYNVAILYWSMKIPGQVAMRQGFEEEVAAYNKANEENQIKLTPYVAGEGRDGLLRQIE
QLDQAVKSKPDAIVIQPADITILSRGVQEANSKNIPVFAYDQYIIKAKLTSFISSDNYQAGWDNGLYIDSQFPPEKVLRI
VPFEYFRVSATVERMDGFFDALRSRNRKFTVLGHFEAVEPVGGLKAAQDYLKKFKRGSVDVIFTNNDGGGLIIVKTLWDA
GHKKLIHATVDGDPASIENIKSKTLTVIDSAQFCGELGRETARTVVQFFKNGKVEPVKFIPTFPVTLESLKFYPGWMGRP
TEKVRFQSLRDIHIKEAKADGKPKRGAIIKVGLTPSCPYLCEMGPAGWSGYLYDILESAAKESDFKLEIVSLPSEKLLPA
LQKQQVHFVISPISKVRYTPDLRVVGPKLGMSLAGALFTPGVKLQLVDSDSLADKRIVFAQLAHENLMQLPPSDFNRSLK
ISGREIGDRMTKLIAERRVDLALGDYNVLRYNMLRRQLLSFEIQPTSLAGYNALVLVGHPKDPEYGELPLILNKWFDTHR
ASGKLEKILKKYNLEDWNIFAL

Sequences:

>Translated_582_residues
MNTLALSFFMALLLTSWVSQARTYNVAILYWSMKIPGQVAMRQGFEEEVAAYNKANEENQIKLTPYVAGEGRDGLLRQIE
QLDQAVKSKPDAIVIQPADITILSRGVQEANSKNIPVFAYDQYIIKAKLTSFISSDNYQAGWDNGLYIDSQFPPEKVLRI
VPFEYFRVSATVERMDGFFDALRSRNRKFTVLGHFEAVEPVGGLKAAQDYLKKFKRGSVDVIFTNNDGGGLIIVKTLWDA
GHKKLIHATVDGDPASIENIKSKTLTVIDSAQFCGELGRETARTVVQFFKNGKVEPVKFIPTFPVTLESLKFYPGWMGRP
TEKVRFQSLRDIHIKEAKADGKPKRGAIIKVGLTPSCPYLCEMGPAGWSGYLYDILESAAKESDFKLEIVSLPSEKLLPA
LQKQQVHFVISPISKVRYTPDLRVVGPKLGMSLAGALFTPGVKLQLVDSDSLADKRIVFAQLAHENLMQLPPSDFNRSLK
ISGREIGDRMTKLIAERRVDLALGDYNVLRYNMLRRQLLSFEIQPTSLAGYNALVLVGHPKDPEYGELPLILNKWFDTHR
ASGKLEKILKKYNLEDWNIFAL
>Mature_582_residues
MNTLALSFFMALLLTSWVSQARTYNVAILYWSMKIPGQVAMRQGFEEEVAAYNKANEENQIKLTPYVAGEGRDGLLRQIE
QLDQAVKSKPDAIVIQPADITILSRGVQEANSKNIPVFAYDQYIIKAKLTSFISSDNYQAGWDNGLYIDSQFPPEKVLRI
VPFEYFRVSATVERMDGFFDALRSRNRKFTVLGHFEAVEPVGGLKAAQDYLKKFKRGSVDVIFTNNDGGGLIIVKTLWDA
GHKKLIHATVDGDPASIENIKSKTLTVIDSAQFCGELGRETARTVVQFFKNGKVEPVKFIPTFPVTLESLKFYPGWMGRP
TEKVRFQSLRDIHIKEAKADGKPKRGAIIKVGLTPSCPYLCEMGPAGWSGYLYDILESAAKESDFKLEIVSLPSEKLLPA
LQKQQVHFVISPISKVRYTPDLRVVGPKLGMSLAGALFTPGVKLQLVDSDSLADKRIVFAQLAHENLMQLPPSDFNRSLK
ISGREIGDRMTKLIAERRVDLALGDYNVLRYNMLRRQLLSFEIQPTSLAGYNALVLVGHPKDPEYGELPLILNKWFDTHR
ASGKLEKILKKYNLEDWNIFAL

Specific function: Involved In The High-Affinity D-Ribose Membrane Transport System And Also Serves As The Primary Chemoreceptor For Chemotaxis. [C]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65347; Mature: 65347

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLALSFFMALLLTSWVSQARTYNVAILYWSMKIPGQVAMRQGFEEEVAAYNKANEENQ
CCHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCHHHHHHCCCHHHHHHHCCCCCCCE
IKLTPYVAGEGRDGLLRQIEQLDQAVKSKPDAIVIQPADITILSRGVQEANSKNIPVFAY
EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEHHHHHHCCCCCCCEEEE
DQYIIKAKLTSFISSDNYQAGWDNGLYIDSQFPPEKVLRIVPFEYFRVSATVERMDGFFD
CHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHEECCHHHEEHHHHHHHHHHHHH
ALRSRNRKFTVLGHFEAVEPVGGLKAAQDYLKKFKRGSVDVIFTNNDGGGLIIVKTLWDA
HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCC
GHKKLIHATVDGDPASIENIKSKTLTVIDSAQFCGELGRETARTVVQFFKNGKVEPVKFI
CCCEEEEEEECCCCHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
PTFPVTLESLKFYPGWMGRPTEKVRFQSLRDIHIKEAKADGKPKRGAIIKVGLTPSCPYL
CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCCHH
CEMGPAGWSGYLYDILESAAKESDFKLEIVSLPSEKLLPALQKQQVHFVISPISKVRYTP
CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCEEEEEECHHHCEECC
DLRVVGPKLGMSLAGALFTPGVKLQLVDSDSLADKRIVFAQLAHENLMQLPPSDFNRSLK
CCEEECCHHCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
ISGREIGDRMTKLIAERRVDLALGDYNVLRYNMLRRQLLSFEIQPTSLAGYNALVLVGHP
ECCHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHEECCCCEECCCCEEEEEECC
KDPEYGELPLILNKWFDTHRASGKLEKILKKYNLEDWNIFAL
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MNTLALSFFMALLLTSWVSQARTYNVAILYWSMKIPGQVAMRQGFEEEVAAYNKANEENQ
CCHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCHHHHHHCCCHHHHHHHCCCCCCCE
IKLTPYVAGEGRDGLLRQIEQLDQAVKSKPDAIVIQPADITILSRGVQEANSKNIPVFAY
EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEHHHHHHCCCCCCCEEEE
DQYIIKAKLTSFISSDNYQAGWDNGLYIDSQFPPEKVLRIVPFEYFRVSATVERMDGFFD
CHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHEECCHHHEEHHHHHHHHHHHHH
ALRSRNRKFTVLGHFEAVEPVGGLKAAQDYLKKFKRGSVDVIFTNNDGGGLIIVKTLWDA
HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCC
GHKKLIHATVDGDPASIENIKSKTLTVIDSAQFCGELGRETARTVVQFFKNGKVEPVKFI
CCCEEEEEEECCCCHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
PTFPVTLESLKFYPGWMGRPTEKVRFQSLRDIHIKEAKADGKPKRGAIIKVGLTPSCPYL
CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCCHH
CEMGPAGWSGYLYDILESAAKESDFKLEIVSLPSEKLLPALQKQQVHFVISPISKVRYTP
CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCEEEEEECHHHCEECC
DLRVVGPKLGMSLAGALFTPGVKLQLVDSDSLADKRIVFAQLAHENLMQLPPSDFNRSLK
CCEEECCHHCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
ISGREIGDRMTKLIAERRVDLALGDYNVLRYNMLRRQLLSFEIQPTSLAGYNALVLVGHP
ECCHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHEECCCCEECCCCEEEEEECC
KDPEYGELPLILNKWFDTHRASGKLEKILKKYNLEDWNIFAL
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA