| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is pepP [H]
Identifier: 42522891
GI number: 42522891
Start: 1297429
End: 1298703
Strand: Direct
Name: pepP [H]
Synonym: Bd1372
Alternate gene names: 42522891
Gene position: 1297429-1298703 (Clockwise)
Preceding gene: 42522890
Following gene: 42522894
Centisome position: 34.3
GC content: 51.92
Gene sequence:
>1275_bases ATGTTGTTTGCTGAAAGTGTTTATAAGACCCGTCAGGGGAAAGTGGCCGACGCCTGGAAAGGCCTGTTAGGTCCCCAGGA TCTGGTCCTGATTCACAGTGGTGAGGCCGTGCAAAAGCCGGGTGGCCTGGATCAGACGTATGATTTTCTGCCTCATCCCT CCTATTTCTGGCTGACCGGACACCGCCGTGATGAAGGTGTCATGGCTTATTCTGTGAGCGAAGGCTGGATTGAACATCAA CGTCCACTCAGTCCCGTGGACATCGTCTGGGAGGGCGCTGAAGGAAATTTTGAATGCGAACACACTCTGGTGGATCTGCA AAAGAAGTTGCAGGGCGGGGCGTACAAGCGCGTGTTCCACCTGGGACAGACATCAGAAAAGTCATTTGAAGCCGAAACCC GCGAACTGTCGATCAAGCTGGATCAGGTTCGTCGTTGCAAAGATTCACACGAAGTTCAGTTGATTCGTCAGATCGCTGCG ATGGCCAACAAAGGTTATCAGGCGTTGCAAAATGCATTAAGACCGGGAATCACCGAGCGTGAACTGCAATTGCATTATGA AAACGCCGTGTTGATGGCGGGCGCTGACAAGATGCCTTACGGTTCGATTGTGGGCAGTGGCGAAAACGCGGCAATCTTGC ACGCGGTTCCGACCAAAAAGAAAGTTGTTTCTGGCGAATTGGTGCTGGTTGATGCCGGTGCTGATATTGAAGACTATTGT GTCGATATCACCCGCGTATTCGCTGTGGATGGTAAGTTCACCGGGCAGCAAAAGGATGTTTATGACCTGGTTCATGACGC TTATAAAGCCTCTGTGGCCCTGTGCCGCCCGGGGACTCAGTGGCGTGATGTTCATATGAAATCCGCCCGCGTGATTGCTG AAGGTTTGCAGCAGTGGGGCATTTGGAAAAGCTCCGTGGATGCGGCTTTGGAATCCGGCGCGATTTCCGTATTCTATCCG CATGGCGTGGGTCACCTGGTGGGCTTGAAAGTGCGTGACACCGGCAATCCGGAAAACGTGAATCCACAACGCTATTACGG AGCTCGTCTGCGTGTGGATCTGGAGTTAAAAGAAAATTACCTGATCACGGTTGAGCCGGGCTGCTATTTCGCCCGTGCGT TTATTGAAGACAATGACCTCCGCGAAAAATACAAGGACCACATTCAGTGGTCCGAGGCTGAAAAGTGGAAGTCCTTTGGC GGGGTTCGTCTGGAAGATGACATCCTGATCACAAAAGGTGAGGCAGAGAGTCTTACCAACGTTGTTCTCAAGTAA
Upstream 100 bases:
>100_bases TGTTCAACCGGGTTGTCGAGCTGCCATCAAGTCACTAAGAAATTGAAAATTCAAACGACGAAGGCAGCCCCGAGCTGCCT TTGTTTTATAGGTGGTCGCT
Downstream 100 bases:
>100_bases AATTACAACGAGGTCTCCTGGCCGGCTTTAAGCCAGGAGGACCACTTCTGTGAATCATAGTCTAAATCTGGGACACTTTC ATGGGCCTCCATTGACGTGT
Product: aminopeptidase P
Products: NA
Alternate protein names: Aminoacylproline aminopeptidase; Aminopeptidase P II; APP-II; X-Pro aminopeptidase [H]
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MLFAESVYKTRQGKVADAWKGLLGPQDLVLIHSGEAVQKPGGLDQTYDFLPHPSYFWLTGHRRDEGVMAYSVSEGWIEHQ RPLSPVDIVWEGAEGNFECEHTLVDLQKKLQGGAYKRVFHLGQTSEKSFEAETRELSIKLDQVRRCKDSHEVQLIRQIAA MANKGYQALQNALRPGITERELQLHYENAVLMAGADKMPYGSIVGSGENAAILHAVPTKKKVVSGELVLVDAGADIEDYC VDITRVFAVDGKFTGQQKDVYDLVHDAYKASVALCRPGTQWRDVHMKSARVIAEGLQQWGIWKSSVDAALESGAISVFYP HGVGHLVGLKVRDTGNPENVNPQRYYGARLRVDLELKENYLITVEPGCYFARAFIEDNDLREKYKDHIQWSEAEKWKSFG GVRLEDDILITKGEAESLTNVVLK
Sequences:
>Translated_424_residues MLFAESVYKTRQGKVADAWKGLLGPQDLVLIHSGEAVQKPGGLDQTYDFLPHPSYFWLTGHRRDEGVMAYSVSEGWIEHQ RPLSPVDIVWEGAEGNFECEHTLVDLQKKLQGGAYKRVFHLGQTSEKSFEAETRELSIKLDQVRRCKDSHEVQLIRQIAA MANKGYQALQNALRPGITERELQLHYENAVLMAGADKMPYGSIVGSGENAAILHAVPTKKKVVSGELVLVDAGADIEDYC VDITRVFAVDGKFTGQQKDVYDLVHDAYKASVALCRPGTQWRDVHMKSARVIAEGLQQWGIWKSSVDAALESGAISVFYP HGVGHLVGLKVRDTGNPENVNPQRYYGARLRVDLELKENYLITVEPGCYFARAFIEDNDLREKYKDHIQWSEAEKWKSFG GVRLEDDILITKGEAESLTNVVLK >Mature_424_residues MLFAESVYKTRQGKVADAWKGLLGPQDLVLIHSGEAVQKPGGLDQTYDFLPHPSYFWLTGHRRDEGVMAYSVSEGWIEHQ RPLSPVDIVWEGAEGNFECEHTLVDLQKKLQGGAYKRVFHLGQTSEKSFEAETRELSIKLDQVRRCKDSHEVQLIRQIAA MANKGYQALQNALRPGITERELQLHYENAVLMAGADKMPYGSIVGSGENAAILHAVPTKKKVVSGELVLVDAGADIEDYC VDITRVFAVDGKFTGQQKDVYDLVHDAYKASVALCRPGTQWRDVHMKSARVIAEGLQQWGIWKSSVDAALESGAISVFYP HGVGHLVGLKVRDTGNPENVNPQRYYGARLRVDLELKENYLITVEPGCYFARAFIEDNDLREKYKDHIQWSEAEKWKSFG GVRLEDDILITKGEAESLTNVVLK
Specific function: Unknown
COG id: COG0006
COG function: function code E; Xaa-Pro aminopeptidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24B family [H]
Homologues:
Organism=Homo sapiens, GI149589008, Length=300, Percent_Identity=31.6666666666667, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI260593665, Length=300, Percent_Identity=31.6666666666667, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI260593663, Length=262, Percent_Identity=33.587786259542, Blast_Score=144, Evalue=1e-34, Organism=Homo sapiens, GI11559925, Length=273, Percent_Identity=26.7399267399267, Blast_Score=114, Evalue=1e-25, Organism=Escherichia coli, GI1789275, Length=284, Percent_Identity=34.1549295774648, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI1790282, Length=292, Percent_Identity=29.7945205479452, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1788728, Length=293, Percent_Identity=27.3037542662116, Blast_Score=101, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17508215, Length=454, Percent_Identity=28.4140969162996, Blast_Score=177, Evalue=9e-45, Organism=Caenorhabditis elegans, GI71989583, Length=306, Percent_Identity=23.202614379085, Blast_Score=68, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6321118, Length=412, Percent_Identity=29.126213592233, Blast_Score=180, Evalue=4e-46, Organism=Saccharomyces cerevisiae, GI6320922, Length=291, Percent_Identity=27.8350515463918, Blast_Score=111, Evalue=2e-25, Organism=Drosophila melanogaster, GI21357079, Length=292, Percent_Identity=35.958904109589, Blast_Score=179, Evalue=4e-45, Organism=Drosophila melanogaster, GI19920384, Length=411, Percent_Identity=25.0608272506083, Blast_Score=104, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR007865 - InterPro: IPR001131 [H]
Pfam domain/function: PF05195 AMP_N; PF00557 Peptidase_M24 [H]
EC number: =3.4.11.9 [H]
Molecular weight: Translated: 47517; Mature: 47517
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFAESVYKTRQGKVADAWKGLLGPQDLVLIHSGEAVQKPGGLDQTYDFLPHPSYFWLTG CCCHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCHHHCCCCCCEEEEEC HRRDEGVMAYSVSEGWIEHQRPLSPVDIVWEGAEGNFECEHTLVDLQKKLQGGAYKRVFH CCCCCCEEEEEECCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEHEE LGQTSEKSFEAETRELSIKLDQVRRCKDSHEVQLIRQIAAMANKGYQALQNALRPGITER CCCCCCCCCCCCHHHEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCH ELQLHYENAVLMAGADKMPYGSIVGSGENAAILHAVPTKKKVVSGELVLVDAGADIEDYC HEEEEECCEEEEECCCCCCCCCEEECCCCEEEEEECCCCCEEECCCEEEEECCCCHHHHH VDITRVFAVDGKFTGQQKDVYDLVHDAYKASVALCRPGTQWRDVHMKSARVIAEGLQQWG HHEEEEEEECCCCCCCCHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC IWKSSVDAALESGAISVFYPHGVGHLVGLKVRDTGNPENVNPQRYYGARLRVDLELKENY CCHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCHHEECEEEEEEEEECCCE LITVEPGCYFARAFIEDNDLREKYKDHIQWSEAEKWKSFGGVRLEDDILITKGEAESLTN EEEECCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCCEEECCEEEECCCHHHHHH VVLK HHCC >Mature Secondary Structure MLFAESVYKTRQGKVADAWKGLLGPQDLVLIHSGEAVQKPGGLDQTYDFLPHPSYFWLTG CCCHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCHHHCCCCCCEEEEEC HRRDEGVMAYSVSEGWIEHQRPLSPVDIVWEGAEGNFECEHTLVDLQKKLQGGAYKRVFH CCCCCCEEEEEECCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEHEE LGQTSEKSFEAETRELSIKLDQVRRCKDSHEVQLIRQIAAMANKGYQALQNALRPGITER CCCCCCCCCCCCHHHEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCH ELQLHYENAVLMAGADKMPYGSIVGSGENAAILHAVPTKKKVVSGELVLVDAGADIEDYC HEEEEECCEEEEECCCCCCCCCEEECCCCEEEEEECCCCCEEECCCEEEEECCCCHHHHH VDITRVFAVDGKFTGQQKDVYDLVHDAYKASVALCRPGTQWRDVHMKSARVIAEGLQQWG HHEEEEEEECCCCCCCCHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC IWKSSVDAALESGAISVFYPHGVGHLVGLKVRDTGNPENVNPQRYYGARLRVDLELKENY CCHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCHHEECEEEEEEEEECCCE LITVEPGCYFARAFIEDNDLREKYKDHIQWSEAEKWKSFGGVRLEDDILITKGEAESLTN EEEECCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCCEEECCEEEECCCHHHHHH VVLK HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2659585; 1339425; 9278503; 9520390 [H]