| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522886
Identifier: 42522886
GI number: 42522886
Start: 1291277
End: 1291819
Strand: Direct
Name: 42522886
Synonym: Bd1367
Alternate gene names: NA
Gene position: 1291277-1291819 (Clockwise)
Preceding gene: 42522884
Following gene: 42522887
Centisome position: 34.13
GC content: 52.49
Gene sequence:
>543_bases ATGGAAATCTCACCAAGTGGAAGAAAGCAAGATGCCAAACACAAAGGCTCAACCCCGCATTCGAAGCTGCTGGTGATTGA TCGCCAGTTTGATGTGCCACTGGAGAAGCTGTTTGCCGCCTTTAGCAGCGCGGAGGCCCTTAAAAGATGGTGGTGGCCGG AGGGCATTTACGCAGATCACATTGATTGGGAGCTGCGGGACGGCGGCAAGTACTTCATCAATATGAAGGGCTACGATCAG AGTGCCAGCGGCATGGCCGGTTGGATTGAAGAGGTGGTAAAAAACGAACGCATCGTTATGACCGACCAATTCGCCAATGA AAAAGGCGAGCCGATCTCGGCCAAAGAAGCCAACATGCCAGGGGAATGGCCCGCCAAAGGCTATATCACCTTCGAGTTTG AATCCCGCGGGAAGGATCGCAGTGCTTTTAGGCTGTCGCAAGAAGGTATCCCCAATGAATTGCAAGCGGAGTGTATTCAA GGCTGGGCAGAGTCTTTTGAAAAACTGAAGAAATACTTGGCGGGGCCGGCGCAAGGCCACTAA
Upstream 100 bases:
>100_bases TGATTTGAGGCCACTTTTAACACAATATGCGTAAAACTCTTAATTCCTGAACCCACTTCTATAAACTTGTCCGGGAAGCG ATGAGAGCAAAGGAGTTCAA
Downstream 100 bases:
>100_bases GGTGGCATACATCAAAAGTACGATGATCTTTGCCGTTTGTATTTCGTTGTCGTAATCCCACGAGAAGAATGATTAAGAGA CTGAAAAGGTCTTGGGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MEISPSGRKQDAKHKGSTPHSKLLVIDRQFDVPLEKLFAAFSSAEALKRWWWPEGIYADHIDWELRDGGKYFINMKGYDQ SASGMAGWIEEVVKNERIVMTDQFANEKGEPISAKEANMPGEWPAKGYITFEFESRGKDRSAFRLSQEGIPNELQAECIQ GWAESFEKLKKYLAGPAQGH
Sequences:
>Translated_180_residues MEISPSGRKQDAKHKGSTPHSKLLVIDRQFDVPLEKLFAAFSSAEALKRWWWPEGIYADHIDWELRDGGKYFINMKGYDQ SASGMAGWIEEVVKNERIVMTDQFANEKGEPISAKEANMPGEWPAKGYITFEFESRGKDRSAFRLSQEGIPNELQAECIQ GWAESFEKLKKYLAGPAQGH >Mature_180_residues MEISPSGRKQDAKHKGSTPHSKLLVIDRQFDVPLEKLFAAFSSAEALKRWWWPEGIYADHIDWELRDGGKYFINMKGYDQ SASGMAGWIEEVVKNERIVMTDQFANEKGEPISAKEANMPGEWPAKGYITFEFESRGKDRSAFRLSQEGIPNELQAECIQ GWAESFEKLKKYLAGPAQGH
Specific function: Unknown
COG id: COG3832
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20457; Mature: 20457
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEISPSGRKQDAKHKGSTPHSKLLVIDRQFDVPLEKLFAAFSSAEALKRWWWPEGIYADH CCCCCCCCCCCHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECC IDWELRDGGKYFINMKGYDQSASGMAGWIEEVVKNERIVMTDQFANEKGEPISAKEANMP CCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC GEWPAKGYITFEFESRGKDRSAFRLSQEGIPNELQAECIQGWAESFEKLKKYLAGPAQGH CCCCCCCEEEEEECCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MEISPSGRKQDAKHKGSTPHSKLLVIDRQFDVPLEKLFAAFSSAEALKRWWWPEGIYADH CCCCCCCCCCCHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECC IDWELRDGGKYFINMKGYDQSASGMAGWIEEVVKNERIVMTDQFANEKGEPISAKEANMP CCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC GEWPAKGYITFEFESRGKDRSAFRLSQEGIPNELQAECIQGWAESFEKLKKYLAGPAQGH CCCCCCCEEEEEECCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA