| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522833
Identifier: 42522833
GI number: 42522833
Start: 1239080
End: 1241359
Strand: Direct
Name: 42522833
Synonym: Bd1312
Alternate gene names: NA
Gene position: 1239080-1241359 (Clockwise)
Preceding gene: 42522832
Following gene: 42522834
Centisome position: 32.75
GC content: 50.83
Gene sequence:
>2280_bases TTGGCGATGGCTTGCATTCAGCAGTCCCACTGTTCTGATCAGGTAAAGAAACTGCAGACCCAATTGCAGTGGAACTGCGA ACTTGAAGTCAAATCCCAAAACTGCGCCAAACTTTCAGAAGAGCATCCGGACTGGGCGCCACTGATGCGCAAGTGCGATC TGGCTTCGCAATGCCAGGAGCAAAAAGAATACGCACAGAAAAAAGCGCTGGCCTGTTTGCGGGGATATAAAAACGCGATG GTCGATCTGGGAATCTCTTTGAAAGACATGACCGTTTCGCTGGCGGGTCTTGTCGAGGACAGTTGGGAGTCCCTCAAGAA GAACAACCGTGAACGGGCGGCGTTCCTCAAGCAATGCAACACCTCGTTGTCCTGCAAAAAAGATCTGGTGAAAGACGATC ATCGCTACAACAAACTTTCTGATGAAGAAATCAACAAACTGCCTGCGTCGTTTTTGTATGTGCAGGCTCAGGATATGAAA GCTTACAGGTCGTCGCTGGAGCGCGTGCGCCCCAAGCCTTATGTGCCGATTGCCGAGCGCGCTCGTGACGACACCGCAAT GACCTCTGATCAGAATCAGAAGCTTGAAAACCTGATGAACATCGCCGGTTCCAAAATTAAAGAACAGTATGGCCGCTACA TGTGCTACAACGCTTTGGCCCGGGAAGAGCTGGAGTGTTACGCCATCGGCACGATCGTTGATCCGACACTGCTGGCAGGC TACTTCGTAAAAGGGGCTCGAGCCGCCACAGCCGCGGGCCGAATGATCAAGGCTGAAAAAGAGATTCAGGCTGGAACTGA AGTAGCGGTTGGGGCGGGGAAGGTTTCCCGCAGTGAACTTACCGGCCGTTACATAAGCTATTCTCCGACCAGTGTAGAGC AGAACACCGCTTGGATTGCCCGTGCTGAAAAAGGTGCGGATACCAACGTGACATTCCTGGATGTGGAAAACAGCCAGATG AAATATCTGAATGACATTTTAAAGGACAAAAACCTTGTGACGGGGTTGACGAATTATCACAAGGAATTGTTGTTTGATAA TATCAAGGCACTGGAAGCTGCTAACCCGGGGCTGGTCATTGATAAGTACTCTGATTTCAAGTCCTCGCGTTTTGCTTTTT CAGGCAAAGTCCCCAAGGACATTGAAGAGCAGTTGGAAAAGGTTTTTGACAAAACCAATGCTGAATTCAACAAAAAGCTG AAAGAGTCAGGCGCCCTGAAGCCCGACACCAAAACAGAAGACTGGTTCCGCGCTGGCATTGGCAATTCGGCTGATGAGGC CAATATGGCGGCCCGCTACTCCCGTCAGTTGGACAAGAACGAAGTTCAGAGCTTCCGCAAGGATGGTTTGAAGACCACGA TGCAACAGAAAATCAATTCCCTTGAAAAGCAACGCCAAGAGCTGCGCACGGAAGTCGCTGGCACCGGCATGGTGGATGGA AAGACTTTCGATCAGGACGTGTTTGATATCGTCCGTAAAGGCAAAGGGGATACGGCCCAGGTGCAGCAGGCCTTGAAAAA CCGCTATGCTTTAAGTGACATTTCAACCGGCACCGTCAAAAAATTGCAGTCTTATGTGACTGCGACAGATGAGTTTTCAC CGGGGATTTATATCGCCAAGCGGGAGATTGCCCATCTGAATGCAGCAGATCAGGGTGGTTTGTCGGTGGACATTATCGGG CTGGGTTCAGCGAACTTAAAAGGCACGGCTGAAGCGTTGGCTTCTTCTTCCAACGTGAACCGGGCCCTGGAGACCACTCG GGCGGCAGAAAAAGCCGTCACCAAAAAATTCAATGACCAGAAAAAGCAGTTTGAGGATGTTTTGACCAAAGCCGTCCCGT CAGGGAAGTTGAAGTCTTTGTGTTCAGGGGATGACTGCGTGGCCGTGGCGGTGAAGCCTTTAAATCAGGCTGAAAAGCAG GACATCTTAAAGGGTCTGGCTAACACCGACTACTCGGGAACCTACCGACTGGCCTTCATTCCGGATGGTGTGCGGAATGT ATCGGCCCGCAACGCTTTGGCCAATCATGGAGAGTCGGTTGAAAAAATCCTGCGCCAATCCTTGGGGGCAAGGATGGAGC CACGCAAACTTAAAGGCCTGACTTTCGGTGTGGACATGCGGACTCAGAATTTAAACGAGGGCAGTGTCAAATTGCTGATG GGTGAAGCCAAAGGCGTGACGCTGACATCCAGCGAACGCAAACAAATTCAGGAAGCCTTCAAAGAAGCCATCCAAAAATT CAACACCTCCACCTCCGCCAACTACAACGCCCTCCCATAA
Upstream 100 bases:
>100_bases CGAAAAGACAGGTGAGGAATATGAGTTGGGTCTTCACATAATTGTCATCATCTTAACAATAGTCTGGGCTGGTCCGGGAA AAGCCGCACCCGAGGTGGCT
Downstream 100 bases:
>100_bases AAAGGTGCCTGGTTGTTTTATCTGGCTACAGTGCAGAATCTTGTTCGAAATACATTTATCCTGCCCCCTCAGACTGAGCT ATCGTAAAGGCCTGAGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 759; Mature: 758
Protein sequence:
>759_residues MAMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQEQKEYAQKKALACLRGYKNAM VDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCNTSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMK AYRSSLERVRPKPYVPIAERARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIARAEKGADTNVTFLDVENSQM KYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVIDKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKL KESGALKPDTKTEDWFRAGIGNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAKREIAHLNAADQGGLSVDIIG LGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQKKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQ DILKGLANTDYSGTYRLAFIPDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP
Sequences:
>Translated_759_residues MAMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQEQKEYAQKKALACLRGYKNAM VDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCNTSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMK AYRSSLERVRPKPYVPIAERARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIARAEKGADTNVTFLDVENSQM KYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVIDKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKL KESGALKPDTKTEDWFRAGIGNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAKREIAHLNAADQGGLSVDIIG LGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQKKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQ DILKGLANTDYSGTYRLAFIPDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP >Mature_758_residues AMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQEQKEYAQKKALACLRGYKNAMV DLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCNTSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMKA YRSSLERVRPKPYVPIAERARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAGY FVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIARAEKGADTNVTFLDVENSQMK YLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVIDKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKLK ESGALKPDTKTEDWFRAGIGNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDGK TFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAKREIAHLNAADQGGLSVDIIGL GSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQKKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQD ILKGLANTDYSGTYRLAFIPDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLMG EAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84179; Mature: 84048
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQE CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCHHHHHHHCCHHHHHHH QKEYAQKKALACLRGYKNAMVDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCN HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC TSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMKAYRSSLERVRPKPYVPIAER CCCHHHHHHHHCCHHHCCCCHHHHHHCCCHHEEEEHHHHHHHHHHHHHCCCCCCCCHHHH ARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHCHHHHHH YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIA HHHHCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCEEECCCCCCCCCCHHEE RAEKGADTNVTFLDVENSQMKYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVI ECCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE DKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKLKESGALKPDTKTEDWFRAGI ECCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCC GNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAK CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEH REIAHLNAADQGGLSVDIIGLGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQ HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH KKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQDILKGLANTDYSGTYRLAFI HHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEC PDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCEEEEE GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP ECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQE CHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCHHHHHHHCCHHHHHHH QKEYAQKKALACLRGYKNAMVDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCN HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC TSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMKAYRSSLERVRPKPYVPIAER CCCHHHHHHHHCCHHHCCCCHHHHHHCCCHHEEEEHHHHHHHHHHHHHCCCCCCCCHHHH ARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHCHHHHHH YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIA HHHHCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCEEECCCCCCCCCCHHEE RAEKGADTNVTFLDVENSQMKYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVI ECCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE DKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKLKESGALKPDTKTEDWFRAGI ECCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCC GNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAK CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEH REIAHLNAADQGGLSVDIIGLGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQ HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH KKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQDILKGLANTDYSGTYRLAFI HHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEC PDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCEEEEE GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP ECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA