| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522717
Identifier: 42522717
GI number: 42522717
Start: 1119042
End: 1120676
Strand: Direct
Name: 42522717
Synonym: Bd1177
Alternate gene names: NA
Gene position: 1119042-1120676 (Clockwise)
Preceding gene: 42522714
Following gene: 42522718
Centisome position: 29.58
GC content: 53.46
Gene sequence:
>1635_bases ATGAAGATGAGTAATTTTTTGCTGTTGGGTTTGATGCTTTTGCCAGGGTTGGCTGAAGCTCAGACGGCTTCCAAAGCATG GCGTATCACCAAGCCGTCGTGGACCGCAGCGGATGAACAGCGCTTTGGAGAGTTCGTCACCCAATTGGGTAATGCTGTGG AAAGGCGCGAATGTGCCACCGTGGACGAATGTCTGCGCAGCCCGGCGAATCCCTATGCCGGAACAGATCCGGCGGATCTG CGGCTGTTTGCCGATTGTGCGGATCTGCCTTACTATCTGCGCTCTTATTTCGCCTGGAAAAACGGACTTCCAATGTCTCT TGTCAGCAGTGTTAACACTCTGCCGGGATCTGAAAACAAAGACCCTCGCTATTCCAAATTCGGCAATGCTGTCGGCGGGC GCTACGACATCATCCCTAGCCGCACCAGCAATCCCAATGCGGTTCAACTATTAAATAGAACCATTGTGGACATGACCTAT TCAGCGACCTTCCGTATGATGGGTGACAAAGATGCAGCTCGTTTTACCGATTTCTATCCGGTTAAATTAAACCGCGAAGG CATTCGTCCTGGAACAGTGATTTATGATCCCGCTGGGCATGTGGCGATCATTCATCGGGTAACAGATGACGGACGTATTT TTTATATCGACTCCCACCCGGATAACACTCTGACTTCGGGAATGTACACACCGAAGTTCACCCGCAGCTTTCCAGGGCAT GGCGCTGGATTCAAAAACTTCCGTCCACTGGCACTGCAGGGAGCTTCGCGCAAGGCCAACGGAGAATACTATGGTGGAAA AATTGTCGGAGCGCTGAACACCCAGCTTGCGAACTTCAGTGTCGAGCAATTCTATGGCAATTCGCCAGACCCGGCCGGGG AATGGAACAAAGGCAAGTTCCTGCATCGCGGGGTGCAGTATCCGTACTATGACTATCTTCGTATCGCGATGGCCAGCGGG GATCTGAAAATTGATCCGCTTCAGGACATGCGTCAGATGGTGGCGGATATTTGTGTGAACTTGAAGGACCGTGTGGTGGC GGTCGATATGGCGATCAAAGCGGGGGTGGATCGTAAACCGCATCCAGAGCGTCTGCCGACGAATATCTTTGGTACGACAG GCGAGTGGGAAGACTATGCGTCTCCGTCCCGCGATGCCCGTTTGAAGGTGGGCTTTATGGATATCTTAAATCAGGCCCGC ACTCTGGTTCAGCGTCAGCGTTCTGGCGATCCCGCGATCGTGTATAGCGGTGCCAACATTGCCGAGGATCTTTTGGCGAC GTACGAACGTGAAGCCCGCTTCTGTCAGTTCACCTATCGCAATTCGGCGGGTGGGTCTGTAACTCTGAATTTGGAGGAAG CCCGTCAGCGCGTCTTCGATATCAGCTTTGACCCGTATCACTGTGTCGAGCTGCGCTGGGGTGCCAAATCCCCGCAGGAG CTTGCGACCTGCATGGATGATGAAAATAAACGTCTGTGGTATGACCGGGAAAGATGGCTGCGCAATCAGTGGGAGCGTCG CTATGACGCCCGCATGGATTATTCACTGGATGAGCTGACCGGTCCGAAACCAGGCGCCGGGATCGCCCAGCCACCGGATG TGGATATCATCCGTTTGCTGAATTCCCTGAGATAG
Upstream 100 bases:
>100_bases GAAGCGTGACAGCCTCCAGACCTGCGGTATTTTTGAAAGGATTGTTTTCAGCCGTCAAACTGTTTATCAACGGAGCCCTT TTTGGGCACATGGAGGTTTC
Downstream 100 bases:
>100_bases CCACTTTAAGGGCCCGGTTCCGGGCCCTCTCTCATTTTGAGACACTTTCAAAGTGGCCGCCCTTAAATGTCTCTTTGGAT AGTGTCTTGACGGCCAAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 544; Mature: 544
Protein sequence:
>544_residues MKMSNFLLLGLMLLPGLAEAQTASKAWRITKPSWTAADEQRFGEFVTQLGNAVERRECATVDECLRSPANPYAGTDPADL RLFADCADLPYYLRSYFAWKNGLPMSLVSSVNTLPGSENKDPRYSKFGNAVGGRYDIIPSRTSNPNAVQLLNRTIVDMTY SATFRMMGDKDAARFTDFYPVKLNREGIRPGTVIYDPAGHVAIIHRVTDDGRIFYIDSHPDNTLTSGMYTPKFTRSFPGH GAGFKNFRPLALQGASRKANGEYYGGKIVGALNTQLANFSVEQFYGNSPDPAGEWNKGKFLHRGVQYPYYDYLRIAMASG DLKIDPLQDMRQMVADICVNLKDRVVAVDMAIKAGVDRKPHPERLPTNIFGTTGEWEDYASPSRDARLKVGFMDILNQAR TLVQRQRSGDPAIVYSGANIAEDLLATYEREARFCQFTYRNSAGGSVTLNLEEARQRVFDISFDPYHCVELRWGAKSPQE LATCMDDENKRLWYDRERWLRNQWERRYDARMDYSLDELTGPKPGAGIAQPPDVDIIRLLNSLR
Sequences:
>Translated_544_residues MKMSNFLLLGLMLLPGLAEAQTASKAWRITKPSWTAADEQRFGEFVTQLGNAVERRECATVDECLRSPANPYAGTDPADL RLFADCADLPYYLRSYFAWKNGLPMSLVSSVNTLPGSENKDPRYSKFGNAVGGRYDIIPSRTSNPNAVQLLNRTIVDMTY SATFRMMGDKDAARFTDFYPVKLNREGIRPGTVIYDPAGHVAIIHRVTDDGRIFYIDSHPDNTLTSGMYTPKFTRSFPGH GAGFKNFRPLALQGASRKANGEYYGGKIVGALNTQLANFSVEQFYGNSPDPAGEWNKGKFLHRGVQYPYYDYLRIAMASG DLKIDPLQDMRQMVADICVNLKDRVVAVDMAIKAGVDRKPHPERLPTNIFGTTGEWEDYASPSRDARLKVGFMDILNQAR TLVQRQRSGDPAIVYSGANIAEDLLATYEREARFCQFTYRNSAGGSVTLNLEEARQRVFDISFDPYHCVELRWGAKSPQE LATCMDDENKRLWYDRERWLRNQWERRYDARMDYSLDELTGPKPGAGIAQPPDVDIIRLLNSLR >Mature_544_residues MKMSNFLLLGLMLLPGLAEAQTASKAWRITKPSWTAADEQRFGEFVTQLGNAVERRECATVDECLRSPANPYAGTDPADL RLFADCADLPYYLRSYFAWKNGLPMSLVSSVNTLPGSENKDPRYSKFGNAVGGRYDIIPSRTSNPNAVQLLNRTIVDMTY SATFRMMGDKDAARFTDFYPVKLNREGIRPGTVIYDPAGHVAIIHRVTDDGRIFYIDSHPDNTLTSGMYTPKFTRSFPGH GAGFKNFRPLALQGASRKANGEYYGGKIVGALNTQLANFSVEQFYGNSPDPAGEWNKGKFLHRGVQYPYYDYLRIAMASG DLKIDPLQDMRQMVADICVNLKDRVVAVDMAIKAGVDRKPHPERLPTNIFGTTGEWEDYASPSRDARLKVGFMDILNQAR TLVQRQRSGDPAIVYSGANIAEDLLATYEREARFCQFTYRNSAGGSVTLNLEEARQRVFDISFDPYHCVELRWGAKSPQE LATCMDDENKRLWYDRERWLRNQWERRYDARMDYSLDELTGPKPGAGIAQPPDVDIIRLLNSLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61364; Mature: 61364
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMSNFLLLGLMLLPGLAEAQTASKAWRITKPSWTAADEQRFGEFVTQLGNAVERRECAT CCCHHHHHHHHHHCCCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VDECLRSPANPYAGTDPADLRLFADCADLPYYLRSYFAWKNGLPMSLVSSVNTLPGSENK HHHHHCCCCCCCCCCCHHHEEEEECHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC DPRYSKFGNAVGGRYDIIPSRTSNPNAVQLLNRTIVDMTYSATFRMMGDKDAARFTDFYP CCCHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCHHHHCCEEE VKLNREGIRPGTVIYDPAGHVAIIHRVTDDGRIFYIDSHPDNTLTSGMYTPKFTRSFPGH EEECCCCCCCCCEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCC GAGFKNFRPLALQGASRKANGEYYGGKIVGALNTQLANFSVEQFYGNSPDPAGEWNKGKF CCCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHCCCHHHHCCCCCCCCCCCCCCHH LHRGVQYPYYDYLRIAMASGDLKIDPLQDMRQMVADICVNLKDRVVAVDMAIKAGVDRKP HHHCCCCCHHHHHEEEEECCCEEECCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC HPERLPTNIFGTTGEWEDYASPSRDARLKVGFMDILNQARTLVQRQRSGDPAIVYSGANI CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHH AEDLLATYEREARFCQFTYRNSAGGSVTLNLEEARQRVFDISFDPYHCVELRWGAKSPQE HHHHHHHHHHHCCEEEEEEECCCCCEEEEEHHHHHHHHEECCCCCEEEEEEEECCCCHHH LATCMDDENKRLWYDRERWLRNQWERRYDARMDYSLDELTGPKPGAGIAQPPDVDIIRLL HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHH NSLR HHCC >Mature Secondary Structure MKMSNFLLLGLMLLPGLAEAQTASKAWRITKPSWTAADEQRFGEFVTQLGNAVERRECAT CCCHHHHHHHHHHCCCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VDECLRSPANPYAGTDPADLRLFADCADLPYYLRSYFAWKNGLPMSLVSSVNTLPGSENK HHHHHCCCCCCCCCCCHHHEEEEECHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC DPRYSKFGNAVGGRYDIIPSRTSNPNAVQLLNRTIVDMTYSATFRMMGDKDAARFTDFYP CCCHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCHHHHCCEEE VKLNREGIRPGTVIYDPAGHVAIIHRVTDDGRIFYIDSHPDNTLTSGMYTPKFTRSFPGH EEECCCCCCCCCEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCC GAGFKNFRPLALQGASRKANGEYYGGKIVGALNTQLANFSVEQFYGNSPDPAGEWNKGKF CCCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHCCCHHHHCCCCCCCCCCCCCCHH LHRGVQYPYYDYLRIAMASGDLKIDPLQDMRQMVADICVNLKDRVVAVDMAIKAGVDRKP HHHCCCCCHHHHHEEEEECCCEEECCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC HPERLPTNIFGTTGEWEDYASPSRDARLKVGFMDILNQARTLVQRQRSGDPAIVYSGANI CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHH AEDLLATYEREARFCQFTYRNSAGGSVTLNLEEARQRVFDISFDPYHCVELRWGAKSPQE HHHHHHHHHHHCCEEEEEEECCCCCEEEEEHHHHHHHHEECCCCCEEEEEEEECCCCHHH LATCMDDENKRLWYDRERWLRNQWERRYDARMDYSLDELTGPKPGAGIAQPPDVDIIRLL HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHH NSLR HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA