| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522671
Identifier: 42522671
GI number: 42522671
Start: 1057668
End: 1059188
Strand: Direct
Name: 42522671
Synonym: Bd1123
Alternate gene names: NA
Gene position: 1057668-1059188 (Clockwise)
Preceding gene: 42522669
Following gene: 42522672
Centisome position: 27.96
GC content: 51.41
Gene sequence:
>1521_bases ATGAAATCTCTCAAGGTCACGAACTTCTCTCATGCGGCTTTCTGGGCGGGGCTTTTCCTGCTGGCATTGATCAGTCGTTT TGCTCTTTTGACCAACAAACCCATTCATTTTGACGAAAGCATCAACGGCTGGTTCGTGATGCAGATGTCTAAGCTGGGTT ATTACAAGTACGATCCCAACAACTATCACGGTCCGATGTACTTTTATATGCTGCAGGGGTTTGAGTCCCTGTGGGGCCGA AGTCTGGAAACTCTGCGAGCAGTGCCCGCGGTATTCAGCGTGCTCAGTGTGGTTGTTCTGGCCTGGGGGGCGCTTCGTCC CAAGGCTGTGAACATGGTGATGGCAGTACTGGTGCTGCTCAGTCCGGCCTTTGTCTTTTTTGGCCGTTCGGGAATTCATG AAATGCCTTTTGTGTTTTTCCAACTGGTGGCGGGTATGGGAATCTTGCGCTGGATCGGACGTCAGGATGAAAAAGCGCTG GGGCTTTTCCTGATCGGGCTGTGGGGCATGATGGCGCTGAAGGAAACATTCGTGATCACGATGTTTGCCTGGGTGGTGGC CTTTTTGACTCTGGGGTGGAATCAATTGCGCACGATGTTTTCCCCGGAAACAATTCGCTTGGCGTGGAGTGGTCGTCTGA CTGTTTTGACGGTGTTGCTGCTTTTGATCTTCCTGCAGTTGTTCACGGGCTTTTATCAGAATCTTTCAGGCATCATCGAT TTCTTTAAAGCGGTACTGCCATGGTTGAAAACCGGGGTGCATGGTCATGGTCACGAAAAAAGCGTGTGGTACTGGCTGCA GGTCCTTTACACGGCTGAGCCATTGGTGCTTTTGGGCGGCTTGCTGGCGGTCGTGGGTATCTTCTCCAAACGCAGGGAAC TGCGTGCTGTCAGTGTGTTTTCATTGGTGCAGCTTTTGGTGTATTCCCTGATCCCGTACAAGACGGTGTGGTGTGTGCTT TCGCTGGTGTGGGGTTTTTACTTTGTTCTGGCGATGTCGCTGGTCAATGCCTTTGAATCCCGCTTTGTGGGCCGCCATGT GCTGGCGGGTGTGGCAGTGTTGTTGGCGGCCGTGGGCCTTCGTAGTGCGTGGATCTCAGTGTATCAAAGACCTATTGATT TGACGCATCCTTATGTTTACGTCAATTCCACCTACGAGCTGGTGCAGGTTTCTGACCTTATCACCAAAAATATTCTGGAA AAACCTTCGTTGGCCCAACAAAGAATGCAAGTCGGCATGAAAGAACAGTGGCCATGGCCGTGGCTTTTGCGCTATGCAAA TAATTTGTCCTATGAGCTTTGCAGCAAACGCGTTCAGGAAAATGCCGCTGTGTATTTCTGTGACTACGGGGTCGCCGATC CTCTGGAGTTGTTGTTGAACGAGCCGTATTGGAAGCTGGAAGTGGTCTTCCGCCAGTCGCGAGAACCAAGTCTGATATAT CTGCGCAAAGCTGATTTTGACATGAGTGATTACAAGGGGCGCCTGCAAAGCGTGGGGCCAGAGTTGGAGGAGTCTCCGTG A
Upstream 100 bases:
>100_bases TCGCGCAGGTACGCCGGAAGCATTTCAGGCTGTTCCAAATAAACAATCAGTGAGCAGTGCGGGGTTGACACGGAAGATTC CATCTTTACGATAGTTAACA
Downstream 100 bases:
>100_bases AAAAAAGGATCATGGCCAGCGGCCTTCTGTTGGGAAGTGTCGCTTTCGCCCAAGTGCAAAAAGTGGACGTGAAAAAAGAG CTGCCGAAAGCTGCGGTGGT
Product: putative membrane-bound mannosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MKSLKVTNFSHAAFWAGLFLLALISRFALLTNKPIHFDESINGWFVMQMSKLGYYKYDPNNYHGPMYFYMLQGFESLWGR SLETLRAVPAVFSVLSVVVLAWGALRPKAVNMVMAVLVLLSPAFVFFGRSGIHEMPFVFFQLVAGMGILRWIGRQDEKAL GLFLIGLWGMMALKETFVITMFAWVVAFLTLGWNQLRTMFSPETIRLAWSGRLTVLTVLLLLIFLQLFTGFYQNLSGIID FFKAVLPWLKTGVHGHGHEKSVWYWLQVLYTAEPLVLLGGLLAVVGIFSKRRELRAVSVFSLVQLLVYSLIPYKTVWCVL SLVWGFYFVLAMSLVNAFESRFVGRHVLAGVAVLLAAVGLRSAWISVYQRPIDLTHPYVYVNSTYELVQVSDLITKNILE KPSLAQQRMQVGMKEQWPWPWLLRYANNLSYELCSKRVQENAAVYFCDYGVADPLELLLNEPYWKLEVVFRQSREPSLIY LRKADFDMSDYKGRLQSVGPELEESP
Sequences:
>Translated_506_residues MKSLKVTNFSHAAFWAGLFLLALISRFALLTNKPIHFDESINGWFVMQMSKLGYYKYDPNNYHGPMYFYMLQGFESLWGR SLETLRAVPAVFSVLSVVVLAWGALRPKAVNMVMAVLVLLSPAFVFFGRSGIHEMPFVFFQLVAGMGILRWIGRQDEKAL GLFLIGLWGMMALKETFVITMFAWVVAFLTLGWNQLRTMFSPETIRLAWSGRLTVLTVLLLLIFLQLFTGFYQNLSGIID FFKAVLPWLKTGVHGHGHEKSVWYWLQVLYTAEPLVLLGGLLAVVGIFSKRRELRAVSVFSLVQLLVYSLIPYKTVWCVL SLVWGFYFVLAMSLVNAFESRFVGRHVLAGVAVLLAAVGLRSAWISVYQRPIDLTHPYVYVNSTYELVQVSDLITKNILE KPSLAQQRMQVGMKEQWPWPWLLRYANNLSYELCSKRVQENAAVYFCDYGVADPLELLLNEPYWKLEVVFRQSREPSLIY LRKADFDMSDYKGRLQSVGPELEESP >Mature_506_residues MKSLKVTNFSHAAFWAGLFLLALISRFALLTNKPIHFDESINGWFVMQMSKLGYYKYDPNNYHGPMYFYMLQGFESLWGR SLETLRAVPAVFSVLSVVVLAWGALRPKAVNMVMAVLVLLSPAFVFFGRSGIHEMPFVFFQLVAGMGILRWIGRQDEKAL GLFLIGLWGMMALKETFVITMFAWVVAFLTLGWNQLRTMFSPETIRLAWSGRLTVLTVLLLLIFLQLFTGFYQNLSGIID FFKAVLPWLKTGVHGHGHEKSVWYWLQVLYTAEPLVLLGGLLAVVGIFSKRRELRAVSVFSLVQLLVYSLIPYKTVWCVL SLVWGFYFVLAMSLVNAFESRFVGRHVLAGVAVLLAAVGLRSAWISVYQRPIDLTHPYVYVNSTYELVQVSDLITKNILE KPSLAQQRMQVGMKEQWPWPWLLRYANNLSYELCSKRVQENAAVYFCDYGVADPLELLLNEPYWKLEVVFRQSREPSLIY LRKADFDMSDYKGRLQSVGPELEESP
Specific function: Unknown
COG id: COG4745
COG function: function code O; Predicted membrane-bound mannosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57973; Mature: 57973
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLKVTNFSHAAFWAGLFLLALISRFALLTNKPIHFDESINGWFVMQMSKLGYYKYDPN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCCEEECCC NYHGPMYFYMLQGFESLWGRSLETLRAVPAVFSVLSVVVLAWGALRPKAVNMVMAVLVLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SPAFVFFGRSGIHEMPFVFFQLVAGMGILRWIGRQDEKALGLFLIGLWGMMALKETFVIT HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MFAWVVAFLTLGWNQLRTMFSPETIRLAWSGRLTVLTVLLLLIFLQLFTGFYQNLSGIID HHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFKAVLPWLKTGVHGHGHEKSVWYWLQVLYTAEPLVLLGGLLAVVGIFSKRRELRAVSVF HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVQLLVYSLIPYKTVWCVLSLVWGFYFVLAMSLVNAFESRFVGRHVLAGVAVLLAAVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSAWISVYQRPIDLTHPYVYVNSTYELVQVSDLITKNILEKPSLAQQRMQVGMKEQWPWP HHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH WLLRYANNLSYELCSKRVQENAAVYFCDYGVADPLELLLNEPYWKLEVVFRQSREPSLIY HHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCCCCEEE LRKADFDMSDYKGRLQSVGPELEESP EEECCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKSLKVTNFSHAAFWAGLFLLALISRFALLTNKPIHFDESINGWFVMQMSKLGYYKYDPN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCCEEECCC NYHGPMYFYMLQGFESLWGRSLETLRAVPAVFSVLSVVVLAWGALRPKAVNMVMAVLVLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SPAFVFFGRSGIHEMPFVFFQLVAGMGILRWIGRQDEKALGLFLIGLWGMMALKETFVIT HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MFAWVVAFLTLGWNQLRTMFSPETIRLAWSGRLTVLTVLLLLIFLQLFTGFYQNLSGIID HHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFKAVLPWLKTGVHGHGHEKSVWYWLQVLYTAEPLVLLGGLLAVVGIFSKRRELRAVSVF HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVQLLVYSLIPYKTVWCVLSLVWGFYFVLAMSLVNAFESRFVGRHVLAGVAVLLAAVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSAWISVYQRPIDLTHPYVYVNSTYELVQVSDLITKNILEKPSLAQQRMQVGMKEQWPWP HHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH WLLRYANNLSYELCSKRVQENAAVYFCDYGVADPLELLLNEPYWKLEVVFRQSREPSLIY HHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCCCCEEE LRKADFDMSDYKGRLQSVGPELEESP EEECCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA