| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is yheT [H]
Identifier: 42522669
GI number: 42522669
Start: 1056001
End: 1057005
Strand: Direct
Name: yheT [H]
Synonym: Bd1121
Alternate gene names: 42522669
Gene position: 1056001-1057005 (Clockwise)
Preceding gene: 42522668
Following gene: 42522671
Centisome position: 27.91
GC content: 52.44
Gene sequence:
>1005_bases TTGCAACGACTGAACCTGATTCCATGTGCAGCGCCTTTTTGGGCCGACAGTGGTCACGGTCAGACATTGTGGGCTCACTT CCTGAAGTCCGCAGAGCTTTCACATTTCGGCAAAAAATTTGAAGTCGATCTTCCTGACGGGGATCGACTTTTTTGTTCCT GGCTCGAGGGCCACACCAATCTGGTGGTCAGTCTGTTTCACGGTCTTTCCGGGGATGTCACCTCGGACTATATGCAAAGA ACCGCGCTGATCTGTCAGCAATTGGGGCATTCTGTTGTGCTGGTCAATCACCGTGGAGCTGGTGAGGGCGCGCCCTTTGC AAAACGTCCGTATCATTCCGGCAGTGCCGAGGATGTGTCCGTGGTGCTGGGACAGCTTCGTCAGATGTTCCCGAATAAAA AGCACATCTCGGTCGGATATTCGTTGAGTGGCAATATCATGCTGTGCCTGCTGGGCGGGTATGGTGGAAAGCACAAACCT GACGGTGCGATCACCGTCAATGCGCCCTTAAATCTGCAATCAGGCTCATTGCTTTTAAAATCGGGCTTTAACCGTGTGTA TGACATGCGTTTTGTTCTGCGCCTGCGCAAGCTGGTGGAAGAAAAGCACCGCCTGGGGCTGATCACGGAAAAATATGAAA TTCCGAAGTGGGCCACGGTGTGGGATATGGATCAGATTTACACAGCGCCGGCGTCCGGCTTTGCCAGTCGCGAGGACTAC TATCAGCGTTGTTCTTCGATTCAGTACGTTTCCGGTATTGATGTGCCGACTTACACCCTGACTTCGGCGGATGATCCGTT TGTAGATGTCAGTGACTATCTGCGGGCACCATTCTCCAAGCACGTCCAACTGCATATTGAAAAGCGCGGCGGGCACATGG GCTATCTGCACCGCCAGTCTTTGCCTGTGGGGGGAACGCGCTGGCTGGATTATTATTTGTATGAAGCCTTAAGAGGTCTT GAAGGCACACTCAATGAAAAGGTTCCAGCGCTGTCTCCAAAGTGA
Upstream 100 bases:
>100_bases ACAAAGGTGGACTGCTGCACTGGCTTCACCACGATCCCCGCGGCAGACGCCCGGATGGATATGTGTACGTGAACGGGCAG TACTACTGTAAGGAGTAGAC
Downstream 100 bases:
>100_bases GAAGCCTGGCAATGTCTGTCCTGATTCAAACACCGGAATTTCCAAAACGCGAAGCTGCTGACGGCGAAGGCCCCCCAGCA GTTGGGGTCCCAGATACCAG
Product: esterase/lipase/thioesterase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MQRLNLIPCAAPFWADSGHGQTLWAHFLKSAELSHFGKKFEVDLPDGDRLFCSWLEGHTNLVVSLFHGLSGDVTSDYMQR TALICQQLGHSVVLVNHRGAGEGAPFAKRPYHSGSAEDVSVVLGQLRQMFPNKKHISVGYSLSGNIMLCLLGGYGGKHKP DGAITVNAPLNLQSGSLLLKSGFNRVYDMRFVLRLRKLVEEKHRLGLITEKYEIPKWATVWDMDQIYTAPASGFASREDY YQRCSSIQYVSGIDVPTYTLTSADDPFVDVSDYLRAPFSKHVQLHIEKRGGHMGYLHRQSLPVGGTRWLDYYLYEALRGL EGTLNEKVPALSPK
Sequences:
>Translated_334_residues MQRLNLIPCAAPFWADSGHGQTLWAHFLKSAELSHFGKKFEVDLPDGDRLFCSWLEGHTNLVVSLFHGLSGDVTSDYMQR TALICQQLGHSVVLVNHRGAGEGAPFAKRPYHSGSAEDVSVVLGQLRQMFPNKKHISVGYSLSGNIMLCLLGGYGGKHKP DGAITVNAPLNLQSGSLLLKSGFNRVYDMRFVLRLRKLVEEKHRLGLITEKYEIPKWATVWDMDQIYTAPASGFASREDY YQRCSSIQYVSGIDVPTYTLTSADDPFVDVSDYLRAPFSKHVQLHIEKRGGHMGYLHRQSLPVGGTRWLDYYLYEALRGL EGTLNEKVPALSPK >Mature_334_residues MQRLNLIPCAAPFWADSGHGQTLWAHFLKSAELSHFGKKFEVDLPDGDRLFCSWLEGHTNLVVSLFHGLSGDVTSDYMQR TALICQQLGHSVVLVNHRGAGEGAPFAKRPYHSGSAEDVSVVLGQLRQMFPNKKHISVGYSLSGNIMLCLLGGYGGKHKP DGAITVNAPLNLQSGSLLLKSGFNRVYDMRFVLRLRKLVEEKHRLGLITEKYEIPKWATVWDMDQIYTAPASGFASREDY YQRCSSIQYVSGIDVPTYTLTSADDPFVDVSDYLRAPFSKHVQLHIEKRGGHMGYLHRQSLPVGGTRWLDYYLYEALRGL EGTLNEKVPALSPK
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI23397663, Length=307, Percent_Identity=23.7785016286645, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI194578891, Length=300, Percent_Identity=24.6666666666667, Blast_Score=85, Evalue=1e-16, Organism=Escherichia coli, GI1789752, Length=292, Percent_Identity=31.5068493150685, Blast_Score=125, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17566110, Length=294, Percent_Identity=25.1700680272109, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71985405, Length=294, Percent_Identity=24.8299319727891, Blast_Score=84, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323866, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI24652003, Length=307, Percent_Identity=26.3843648208469, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI281398151, Length=307, Percent_Identity=26.3843648208469, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24581365, Length=324, Percent_Identity=24.6913580246914, Blast_Score=82, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 37344; Mature: 37344
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLNLIPCAAPFWADSGHGQTLWAHFLKSAELSHFGKKFEVDLPDGDRLFCSWLEGHTN CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCHHH LVVSLFHGLSGDVTSDYMQRTALICQQLGHSVVLVNHRGAGEGAPFAKRPYHSGSAEDVS HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH VVLGQLRQMFPNKKHISVGYSLSGNIMLCLLGGYGGKHKPDGAITVNAPLNLQSGSLLLK HHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHH SGFNRVYDMRFVLRLRKLVEEKHRLGLITEKYEIPKWATVWDMDQIYTAPASGFASREDY HCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECHHHHHCCCCCCCCCHHHH YQRCSSIQYVSGIDVPTYTLTSADDPFVDVSDYLRAPFSKHVQLHIEKRGGHMGYLHRQS HHHHCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEECCCEEEEEECCC LPVGGTRWLDYYLYEALRGLEGTLNEKVPALSPK CCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCC >Mature Secondary Structure MQRLNLIPCAAPFWADSGHGQTLWAHFLKSAELSHFGKKFEVDLPDGDRLFCSWLEGHTN CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCHHH LVVSLFHGLSGDVTSDYMQRTALICQQLGHSVVLVNHRGAGEGAPFAKRPYHSGSAEDVS HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH VVLGQLRQMFPNKKHISVGYSLSGNIMLCLLGGYGGKHKPDGAITVNAPLNLQSGSLLLK HHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHH SGFNRVYDMRFVLRLRKLVEEKHRLGLITEKYEIPKWATVWDMDQIYTAPASGFASREDY HCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECHHHHHCCCCCCCCCHHHH YQRCSSIQYVSGIDVPTYTLTSADDPFVDVSDYLRAPFSKHVQLHIEKRGGHMGYLHRQS HHHHCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEECCCEEEEEECCC LPVGGTRWLDYYLYEALRGLEGTLNEKVPALSPK CCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]