Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 42522441

GI number: 42522441

Start: 816549

End: 817898

Strand: Direct

Name: rarA [H]

Synonym: Bd0869

Alternate gene names: 42522441

Gene position: 816549-817898 (Clockwise)

Preceding gene: 42522440

Following gene: 42522443

Centisome position: 21.58

GC content: 52.22

Gene sequence:

>1350_bases
GTGGATTCTAGGGTTGGGATGGTTTATGACCCTCCTATGGATCTTTTCTCTGCCTCTCAAGCCTCCCATGGAACTTCACC
GCTGTCAGAAATCCTGCGTCCCAAGACGCTGGATGATATCTTTGGACAGCAAAAGACCCTGGGGCCTCAGTCCAAACTAG
GGCAGATGCTTCGCAAGGGTTATTTGCCCAGTCTGATTATTTGGGGTCCTCCGGGCACCGGGAAGACGACCTTCGCTCTG
GCCTTGTCCCAGCATTTCAATGCGCACTATGTGCATCTGAACGCCGTGGACTCTGGCGCCAAGGCACTTCGAGAAGTGGG
TGAAGCGGGCAAAGACCGTCGCCTTCAGTACCAGCAAAAGACCATTCTCTTCGTGGATGAAATTCATCGCTTTAATAAAG
CCCAGCAGGACGTACTTTTGCCTTTCGTGGAAAAAGGCGATCTGGTGCTGGTGGGTGCGACCACGGAAAATCCCAGCTAT
GAACTGAACCGCGCCCTGCTCAGCCGCTGTCGTGTGGTGATTTTTGAGCGTCTGTCTGAAGACGATCTGAACAAGATCGT
AAAACGTGCCGAAACCCACTACGCAAAACCCTTGGATAAAATCCTGACCGAGGATGCACACAAGAATCTGCTGGAATACT
CCGACGGCGATGCCCGTCGTCTGATCAACAGTCTTGAGATTCTGTACACCTTCACCAAAGACGAAGTGGAAGGCCCGCTG
CTGGATGTGAACGACATGCGCGAACTGCTGCAGCAGAATCCTTTGGGTTATGACAAGAACTCAGAAATGCACTATGACAC
CATTTCGGCGTTTATTAAGAGCATTCGTGGCAGTGATCCGGATGCAGCGATGTACTATCTGGCAAGAATGCTCGATGGCG
GGGAAGACCCGGTCTTTATCGCGCGCCGTTTGATTATTCTGGCGTCTGAAGATATCGGAAACGCCGATCCACGGGCTATT
TCCGTGGCTATTGCCGGCCTGCAGGCGGTGGAGGCCATTGGCCTTCCCGAAGGAGCCATCACTCTTTCTCAAGTAACAAC
GTATCTGGCGTCTTGCCCAAAATCCAATGCCTCTTACATGGCTTTGCATAAAGCCCGTGAATTGGTGGAAAAAACCCGCA
CGCTGCCGGTGCCTCTGCATTTGCGATCCGCAAAGACAGCGCTGGCGAAGGATCTGGGGTACGGCCGCGACTATAAATAT
CCGCATAACTATCCCACGGGCTGGGTGGAGCAATCCTATCTGCCGGAAGAAGTTGAAAAGACCGCGATCTATGAACCAAC
CACCAGAGGCTTTGAAAAGAACATCCGCGATTACCTCAGTTGGATGAAGCTGAAAAAGGACAAGGAATAG

Upstream 100 bases:

>100_bases
AAACAGCGATCTATCAGATCAAACAATCCGACGGGGTTGTCTGCTACGCTATTAGTGGTGCTCGTAACACAAATACACCC
ACGATCAGTTGCATTAAATA

Downstream 100 bases:

>100_bases
TTCTATATATAGAATGCGGCTTCCGTCTGGAGCTTCAGGCAAGCTTGATATGAAGACTGACAGTTAGAAATAAAAAAGCC
CCCGTCTGAGAAGAAGGGGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MDSRVGMVYDPPMDLFSASQASHGTSPLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLPSLIIWGPPGTGKTTFAL
ALSQHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQKTILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSY
ELNRALLSRCRVVIFERLSEDDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL
LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFIARRLIILASEDIGNADPRAI
SVAIAGLQAVEAIGLPEGAITLSQVTTYLASCPKSNASYMALHKARELVEKTRTLPVPLHLRSAKTALAKDLGYGRDYKY
PHNYPTGWVEQSYLPEEVEKTAIYEPTTRGFEKNIRDYLSWMKLKKDKE

Sequences:

>Translated_449_residues
MDSRVGMVYDPPMDLFSASQASHGTSPLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLPSLIIWGPPGTGKTTFAL
ALSQHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQKTILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSY
ELNRALLSRCRVVIFERLSEDDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL
LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFIARRLIILASEDIGNADPRAI
SVAIAGLQAVEAIGLPEGAITLSQVTTYLASCPKSNASYMALHKARELVEKTRTLPVPLHLRSAKTALAKDLGYGRDYKY
PHNYPTGWVEQSYLPEEVEKTAIYEPTTRGFEKNIRDYLSWMKLKKDKE
>Mature_449_residues
MDSRVGMVYDPPMDLFSASQASHGTSPLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLPSLIIWGPPGTGKTTFAL
ALSQHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQKTILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSY
ELNRALLSRCRVVIFERLSEDDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL
LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFIARRLIILASEDIGNADPRAI
SVAIAGLQAVEAIGLPEGAITLSQVTTYLASCPKSNASYMALHKARELVEKTRTLPVPLHLRSAKTALAKDLGYGRDYKY
PHNYPTGWVEQSYLPEEVEKTAIYEPTTRGFEKNIRDYLSWMKLKKDKE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=41.6475972540046, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=38.2151029748284, Blast_Score=283, Evalue=3e-76,
Organism=Escherichia coli, GI1787119, Length=421, Percent_Identity=41.3301662707838, Blast_Score=337, Evalue=8e-94,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=40.7582938388626, Blast_Score=314, Evalue=2e-86,
Organism=Saccharomyces cerevisiae, GI6324039, Length=218, Percent_Identity=28.4403669724771, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324478, Length=212, Percent_Identity=27.3584905660377, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI19921076, Length=212, Percent_Identity=27.8301886792453, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50435; Mature: 50435

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRVGMVYDPPMDLFSASQASHGTSPLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKG
CCCCCCEEECCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHC
YLPSLIIWGPPGTGKTTFALALSQHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQK
CCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH
TILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSYELNRALLSRCRVVIFERLSE
HHHHHHHHHHHHHHHHHHHCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH
DDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECHHHCCCCC
LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFI
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH
ARRLIILASEDIGNADPRAISVAIAGLQAVEAIGLPEGAITLSQVTTYLASCPKSNASYM
HHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCHHH
ALHKARELVEKTRTLPVPLHLRSAKTALAKDLGYGRDYKYPHNYPTGWVEQSYLPEEVEK
HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
TAIYEPTTRGFEKNIRDYLSWMKLKKDKE
HHCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDSRVGMVYDPPMDLFSASQASHGTSPLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKG
CCCCCCEEECCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHC
YLPSLIIWGPPGTGKTTFALALSQHFNAHYVHLNAVDSGAKALREVGEAGKDRRLQYQQK
CCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH
TILFVDEIHRFNKAQQDVLLPFVEKGDLVLVGATTENPSYELNRALLSRCRVVIFERLSE
HHHHHHHHHHHHHHHHHHHCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH
DDLNKIVKRAETHYAKPLDKILTEDAHKNLLEYSDGDARRLINSLEILYTFTKDEVEGPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECHHHCCCCC
LDVNDMRELLQQNPLGYDKNSEMHYDTISAFIKSIRGSDPDAAMYYLARMLDGGEDPVFI
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH
ARRLIILASEDIGNADPRAISVAIAGLQAVEAIGLPEGAITLSQVTTYLASCPKSNASYM
HHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCHHH
ALHKARELVEKTRTLPVPLHLRSAKTALAKDLGYGRDYKYPHNYPTGWVEQSYLPEEVEK
HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
TAIYEPTTRGFEKNIRDYLSWMKLKKDKE
HHCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]