| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is phnC [C]
Identifier: 42522432
GI number: 42522432
Start: 807995
End: 808738
Strand: Direct
Name: phnC [C]
Synonym: Bd0860
Alternate gene names: 42522432
Gene position: 807995-808738 (Clockwise)
Preceding gene: 42522431
Following gene: 42522433
Centisome position: 21.36
GC content: 48.79
Gene sequence:
>744_bases ATGGCTGTATTATCAATTGAAAAGCTGAATAAGACATTTAAAGGCGGTCTTTTTGAAAAGGACCGTCATGTGTTGCGTGA CGTGACCTTCTCTTTGCCCGAAGGCCAAACTTCCGGCTTTGTCGGCAGCAATGGGGCGGGTAAAACCACCACCATCAAAT GTCTTTTTGATTTCATTCGCCCGGACAGTGGTCAGATCAACTTTTTTGGAGCCCCTCTGACCAGTGAAAGCAAAACCCGC ATTGGGTACCTTCCAGAGCGCCCTTATCTCTATGAATTCCTGACGGGCATGGAATTCCTGCGTCTGCACTGGAATCTTTG CTATGGTTCCGCGATGAAGGACTTCCATGAAAGAGCTCACGAAGCGCTGAAAAAAGTCGACCTTTTCGAAGCCCGTGATC GCCGTCTTAGAACTTACTCCAAAGGTATGTTGCAAAGAATCGGGATTGCTCAGGCGATTTTGACCCGCCCGGATTTGTTG ATTTTGGATGAACCGATGTCAGGACTTGATCCTGATGGGCGGGCCATGGTGAAAGACATCCTGCGCGAAGAACAAAAGCG CGGTGTCAGTCTGTTCTTCAGCAGCCATCTTTTGCAGGATATGGAAGAGCTTTGCACGCATCTGGTGGTGATCAATCGCG GTCAGATTCTGTACGACGGGGTATTAAGCTCCTTCATGGCTGAATTCCAAAGCCTGGAAAAAGCCTTCTCTGTTCTGAAA GGAAAGGAGGAGGGCCGTGTATAA
Upstream 100 bases:
>100_bases TTTGGGTTCTCGCGACTTGATGCCAGCCACCTCCAAACAGTATGATCCTGTCAGGGAGATGGTGAAAGCTTTGAATATCG AGCTGAAGCCATAGTTTTTC
Downstream 100 bases:
>100_bases GGTTTTGACTTTGGCACGCACCACTTTGCGCGAAATGTTGCGTGAACGTGTTTTTATGGTGGCCGTGTTGATTGCCATCG CTTTGTTGGGTCTGAGCTTC
Product: ABC-type phosphonate transport protein, ATP-binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MAVLSIEKLNKTFKGGLFEKDRHVLRDVTFSLPEGQTSGFVGSNGAGKTTTIKCLFDFIRPDSGQINFFGAPLTSESKTR IGYLPERPYLYEFLTGMEFLRLHWNLCYGSAMKDFHERAHEALKKVDLFEARDRRLRTYSKGMLQRIGIAQAILTRPDLL ILDEPMSGLDPDGRAMVKDILREEQKRGVSLFFSSHLLQDMEELCTHLVVINRGQILYDGVLSSFMAEFQSLEKAFSVLK GKEEGRV
Sequences:
>Translated_247_residues MAVLSIEKLNKTFKGGLFEKDRHVLRDVTFSLPEGQTSGFVGSNGAGKTTTIKCLFDFIRPDSGQINFFGAPLTSESKTR IGYLPERPYLYEFLTGMEFLRLHWNLCYGSAMKDFHERAHEALKKVDLFEARDRRLRTYSKGMLQRIGIAQAILTRPDLL ILDEPMSGLDPDGRAMVKDILREEQKRGVSLFFSSHLLQDMEELCTHLVVINRGQILYDGVLSSFMAEFQSLEKAFSVLK GKEEGRV >Mature_246_residues AVLSIEKLNKTFKGGLFEKDRHVLRDVTFSLPEGQTSGFVGSNGAGKTTTIKCLFDFIRPDSGQINFFGAPLTSESKTRI GYLPERPYLYEFLTGMEFLRLHWNLCYGSAMKDFHERAHEALKKVDLFEARDRRLRTYSKGMLQRIGIAQAILTRPDLLI LDEPMSGLDPDGRAMVKDILREEQKRGVSLFFSSHLLQDMEELCTHLVVINRGQILYDGVLSSFMAEFQSLEKAFSVLKG KEEGRV
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=31.5555555555556, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=31.5555555555556, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=29.5454545454545, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI105990541, Length=230, Percent_Identity=28.695652173913, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI116734710, Length=219, Percent_Identity=29.6803652968037, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI45446740, Length=221, Percent_Identity=30.7692307692308, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI47078218, Length=221, Percent_Identity=30.7692307692308, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI150417984, Length=216, Percent_Identity=28.2407407407407, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI27477115, Length=216, Percent_Identity=28.7037037037037, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI21536376, Length=216, Percent_Identity=26.8518518518519, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI153792144, Length=218, Percent_Identity=26.1467889908257, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=25.5707762557078, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=25.5707762557078, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI6005701, Length=218, Percent_Identity=25.6880733944954, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI27436953, Length=200, Percent_Identity=25, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI255708477, Length=216, Percent_Identity=27.3148148148148, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI148612844, Length=216, Percent_Identity=27.3148148148148, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI21536378, Length=224, Percent_Identity=28.125, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI42490749, Length=226, Percent_Identity=25.6637168141593, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI9961252, Length=215, Percent_Identity=26.9767441860465, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9961250, Length=215, Percent_Identity=26.9767441860465, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4505771, Length=215, Percent_Identity=26.9767441860465, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9955963, Length=242, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=4e-12, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=29.4372294372294, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI48994943, Length=241, Percent_Identity=31.1203319502075, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=31.6964285714286, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1789593, Length=233, Percent_Identity=25.7510729613734, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1790544, Length=246, Percent_Identity=25.609756097561, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788506, Length=250, Percent_Identity=30.4, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789891, Length=242, Percent_Identity=30.9917355371901, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788165, Length=242, Percent_Identity=32.2314049586777, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1787029, Length=204, Percent_Identity=26.9607843137255, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=26.2008733624454, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790739, Length=222, Percent_Identity=27.027027027027, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=26.1538461538462, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=28.0701754385965, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788450, Length=211, Percent_Identity=27.0142180094787, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1788897, Length=230, Percent_Identity=28.2608695652174, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081834, Length=206, Percent_Identity=30.0970873786408, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787089, Length=218, Percent_Identity=26.605504587156, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788761, Length=207, Percent_Identity=27.0531400966184, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=23.728813559322, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789873, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI48994883, Length=241, Percent_Identity=29.8755186721992, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=22.5, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787712, Length=240, Percent_Identity=27.9166666666667, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=29.0748898678414, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789032, Length=204, Percent_Identity=25, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=28.1407035175879, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789962, Length=227, Percent_Identity=29.0748898678414, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787759, Length=247, Percent_Identity=25.5060728744939, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI145693107, Length=238, Percent_Identity=29.8319327731092, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790525, Length=218, Percent_Identity=24.7706422018349, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=26.027397260274, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789864, Length=239, Percent_Identity=25.1046025104602, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994997, Length=216, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789751, Length=224, Percent_Identity=27.2321428571429, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=24.3589743589744, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789963, Length=243, Percent_Identity=30.0411522633745, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786253, Length=209, Percent_Identity=24.4019138755981, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789991, Length=222, Percent_Identity=27.9279279279279, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=24.8756218905473, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87082268, Length=216, Percent_Identity=27.3148148148148, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI87082267, Length=255, Percent_Identity=27.0588235294118, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=27.6995305164319, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786803, Length=209, Percent_Identity=24.4019138755981, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790190, Length=240, Percent_Identity=24.5833333333333, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786703, Length=223, Percent_Identity=25.5605381165919, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI87082064, Length=184, Percent_Identity=28.804347826087, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=23.7209302325581, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787112, Length=222, Percent_Identity=26.1261261261261, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1789586, Length=236, Percent_Identity=25, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788644, Length=229, Percent_Identity=24.4541484716157, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565586, Length=196, Percent_Identity=29.0816326530612, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71983523, Length=222, Percent_Identity=31.0810810810811, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71983510, Length=222, Percent_Identity=31.0810810810811, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71983516, Length=222, Percent_Identity=31.0810810810811, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17510237, Length=229, Percent_Identity=26.6375545851528, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=26.7676767676768, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17533971, Length=219, Percent_Identity=28.310502283105, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71992290, Length=215, Percent_Identity=27.4418604651163, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17558664, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193202878, Length=192, Percent_Identity=24.4791666666667, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17541710, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115533592, Length=226, Percent_Identity=30.9734513274336, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17569143, Length=236, Percent_Identity=26.6949152542373, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI25146777, Length=211, Percent_Identity=25.5924170616114, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322640, Length=210, Percent_Identity=24.7619047619048, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=242, Percent_Identity=23.9669421487603, Blast_Score=62, Evalue=6e-11, Organism=Drosophila melanogaster, GI24666092, Length=203, Percent_Identity=29.5566502463054, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI221512771, Length=239, Percent_Identity=28.4518828451883, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24643674, Length=194, Percent_Identity=29.8969072164948, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI221500365, Length=200, Percent_Identity=27.5, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI116007184, Length=200, Percent_Identity=27.5, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=28.921568627451, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=28.921568627451, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI24650855, Length=244, Percent_Identity=28.6885245901639, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24650853, Length=244, Percent_Identity=28.6885245901639, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24582014, Length=228, Percent_Identity=27.1929824561404, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24582012, Length=228, Percent_Identity=27.1929824561404, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI85725262, Length=196, Percent_Identity=30.6122448979592, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI24648314, Length=222, Percent_Identity=26.1261261261261, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI281362751, Length=243, Percent_Identity=28.3950617283951, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI28573571, Length=211, Percent_Identity=27.0142180094787, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI28573573, Length=211, Percent_Identity=27.0142180094787, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI24653245, Length=224, Percent_Identity=25.8928571428571, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI281363262, Length=224, Percent_Identity=25.8928571428571, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI28574744, Length=223, Percent_Identity=26.0089686098655, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI85726357, Length=220, Percent_Identity=29.0909090909091, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=174, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643672, Length=178, Percent_Identity=25.8426966292135, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28080; Mature: 27949
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLSIEKLNKTFKGGLFEKDRHVLRDVTFSLPEGQTSGFVGSNGAGKTTTIKCLFDFIR CCEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC PDSGQINFFGAPLTSESKTRIGYLPERPYLYEFLTGMEFLRLHWNLCYGSAMKDFHERAH CCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EALKKVDLFEARDRRLRTYSKGMLQRIGIAQAILTRPDLLILDEPMSGLDPDGRAMVKDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHH LREEQKRGVSLFFSSHLLQDMEELCTHLVVINRGQILYDGVLSSFMAEFQSLEKAFSVLK HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GKEEGRV CCCCCCC >Mature Secondary Structure AVLSIEKLNKTFKGGLFEKDRHVLRDVTFSLPEGQTSGFVGSNGAGKTTTIKCLFDFIR CEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC PDSGQINFFGAPLTSESKTRIGYLPERPYLYEFLTGMEFLRLHWNLCYGSAMKDFHERAH CCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EALKKVDLFEARDRRLRTYSKGMLQRIGIAQAILTRPDLLILDEPMSGLDPDGRAMVKDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHH LREEQKRGVSLFFSSHLLQDMEELCTHLVVINRGQILYDGVLSSFMAEFQSLEKAFSVLK HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GKEEGRV CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1670771; 8590279; 8905231 [H]