| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522406
Identifier: 42522406
GI number: 42522406
Start: 778634
End: 780223
Strand: Direct
Name: 42522406
Synonym: Bd0831
Alternate gene names: NA
Gene position: 778634-780223 (Clockwise)
Preceding gene: 42522405
Following gene: 42522407
Centisome position: 20.58
GC content: 52.96
Gene sequence:
>1590_bases ATGAAGAAATTATTACCTCTCCTGATTGCCGCAAGTATTGCAGTTCCGGTGGTGGGCGATGCCCAACAGCGAAAAACGCT GAAAAAGCAGCCAGCTCCGGCACGTCGTGCAGCTCCGCTTGTATCGGGGAACACACGTGAAGCGACCCTCAGAAACCAAC TCAGCAACGCCCTTCGTATGGCCCAAAGCGGGCAGTATGAATCCGCTGCCAATGCGCTGTTCTCGCTCAGCCGCCGTTCC GAACTGGCTTCGGAGCGTCCGCAGATCAAGTACATCCTGGGCACCATGCTGGTTGAGCTGAAACTTTATCAGACGGCCGC ATTCCAGTTCGTGGATGTGATCCGCATGAAACATCCCAAGTATTCCAAAATGGCGATCGAAAAGCTTTCGATCGTGGCGG ACTCCCTGGGTGATGACACGATTCTGAACTACGCGATTTCCCGTGTGGACCTGAATGACTTCCCGGCGAATCTGCGTGAC ATGATCAACTTCCGTTTGGGTGAAATCCGCCTGCGCAACCGCGAATTTGCCAAAGCCGCGGACCTGTTCAGCCGTGTTTC TCCGACCAGCAGCTATTATTTCCAGGCTTTGTACGCCAAGGGTCTGGCAGAACTTGAAGCCAACCAGCCGTCTTTGGCTG TGGGCACCTTCAACAAAATGCTCGATGCCCGCCGTCGCGCTCCGGTGACGGACACGAACAAAGTGGCCGCTCAAATGGGT CTTGCCCGTGCCCTTTATCAAAAGCAGGATTGGGATGCTTCCGTGGAAGCCTATTCCCAGGTCCCTCGCGATACTTTGAT GTGGCATGACGCGGTCTTTGAGCAGAGCTGGGCGATGCTGCGTGCGGCGCGCTTCCGTTCTTCTTTGAGTAACTTCCAAA CTCTCCACTCGGCATATTACGAAGACTTCTATATGCCGGAGAGCTTGCTTTTGCGCTCGATCGTCTACCTGTACATCTGT AAGTACGACGAGATGGAAAAGGTCCTAAGCCTGTTTGAAAAAACCTATGGCCCGGTCCGCTCCAAAATCGGTGACTTCCT GAAGTCCTCCAACGAAGCCGGAACCTTCTATGCAGAGGTTGAAAAAGCCCACCTGATGAAGACCACGGACAAGTCGGCGA ACCTGCGCCTGCCATACATCGTTCTAAGAAACGTGCTGGATCAGGGGGATGTGAAGCGTTCCATGCATTATCTGGAAAAG CTGAACCAGGAAAAAGCGCGTGTGGAATCCAACTCCGCGTTCCGTGCTTCTCCGCTGGGTCAGTATTCCCTGAAGATCCT TGCAAACCGCAGCAAGAACACCAAGTTCGCTATCGGCGACATGGTCAAGGCGCACTTGCTGAACATGCGTGTGGAACTGC GTGACCTTTACGAACAGGCCGGATTCATCCGTTACGAGATGATCACGGGCCGCAAGGAAAGTATCAAAAAGAAAATCGCG GGTAAAGACATCAGCGGTGACCAGATCGATGAAAACGTGAACCGCAAGTTCTACATCGAAAACGGTTATGAGTACTATCC ATTCCAGGGTGAGTACTGGCTGGATGAAGTTGGAAACTACCACTACCTTGGAAAACAGAGCTGCGAGTAA
Upstream 100 bases:
>100_bases ACTTCTTCAATGCCAAAGGCATCGACGGCTCGACAAATTCTTTCAACAACCTCTTCCTTACCGTGGGTATGAGTTGGTTC TTCCCGGAGGCTAGTTACCG
Downstream 100 bases:
>100_bases AGTATGAAAATCAACAGGCATCAACTTCTTGTTTCCGGATTTATGAGTCTTGTTCTGGCGTCCACTGCGGGCGCCCAGAC CAAAACTGTTAAGACCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MKKLLPLLIAASIAVPVVGDAQQRKTLKKQPAPARRAAPLVSGNTREATLRNQLSNALRMAQSGQYESAANALFSLSRRS ELASERPQIKYILGTMLVELKLYQTAAFQFVDVIRMKHPKYSKMAIEKLSIVADSLGDDTILNYAISRVDLNDFPANLRD MINFRLGEIRLRNREFAKAADLFSRVSPTSSYYFQALYAKGLAELEANQPSLAVGTFNKMLDARRRAPVTDTNKVAAQMG LARALYQKQDWDASVEAYSQVPRDTLMWHDAVFEQSWAMLRAARFRSSLSNFQTLHSAYYEDFYMPESLLLRSIVYLYIC KYDEMEKVLSLFEKTYGPVRSKIGDFLKSSNEAGTFYAEVEKAHLMKTTDKSANLRLPYIVLRNVLDQGDVKRSMHYLEK LNQEKARVESNSAFRASPLGQYSLKILANRSKNTKFAIGDMVKAHLLNMRVELRDLYEQAGFIRYEMITGRKESIKKKIA GKDISGDQIDENVNRKFYIENGYEYYPFQGEYWLDEVGNYHYLGKQSCE
Sequences:
>Translated_529_residues MKKLLPLLIAASIAVPVVGDAQQRKTLKKQPAPARRAAPLVSGNTREATLRNQLSNALRMAQSGQYESAANALFSLSRRS ELASERPQIKYILGTMLVELKLYQTAAFQFVDVIRMKHPKYSKMAIEKLSIVADSLGDDTILNYAISRVDLNDFPANLRD MINFRLGEIRLRNREFAKAADLFSRVSPTSSYYFQALYAKGLAELEANQPSLAVGTFNKMLDARRRAPVTDTNKVAAQMG LARALYQKQDWDASVEAYSQVPRDTLMWHDAVFEQSWAMLRAARFRSSLSNFQTLHSAYYEDFYMPESLLLRSIVYLYIC KYDEMEKVLSLFEKTYGPVRSKIGDFLKSSNEAGTFYAEVEKAHLMKTTDKSANLRLPYIVLRNVLDQGDVKRSMHYLEK LNQEKARVESNSAFRASPLGQYSLKILANRSKNTKFAIGDMVKAHLLNMRVELRDLYEQAGFIRYEMITGRKESIKKKIA GKDISGDQIDENVNRKFYIENGYEYYPFQGEYWLDEVGNYHYLGKQSCE >Mature_529_residues MKKLLPLLIAASIAVPVVGDAQQRKTLKKQPAPARRAAPLVSGNTREATLRNQLSNALRMAQSGQYESAANALFSLSRRS ELASERPQIKYILGTMLVELKLYQTAAFQFVDVIRMKHPKYSKMAIEKLSIVADSLGDDTILNYAISRVDLNDFPANLRD MINFRLGEIRLRNREFAKAADLFSRVSPTSSYYFQALYAKGLAELEANQPSLAVGTFNKMLDARRRAPVTDTNKVAAQMG LARALYQKQDWDASVEAYSQVPRDTLMWHDAVFEQSWAMLRAARFRSSLSNFQTLHSAYYEDFYMPESLLLRSIVYLYIC KYDEMEKVLSLFEKTYGPVRSKIGDFLKSSNEAGTFYAEVEKAHLMKTTDKSANLRLPYIVLRNVLDQGDVKRSMHYLEK LNQEKARVESNSAFRASPLGQYSLKILANRSKNTKFAIGDMVKAHLLNMRVELRDLYEQAGFIRYEMITGRKESIKKKIA GKDISGDQIDENVNRKFYIENGYEYYPFQGEYWLDEVGNYHYLGKQSCE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60494; Mature: 60494
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLPLLIAASIAVPVVGDAQQRKTLKKQPAPARRAAPLVSGNTREATLRNQLSNALRM CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH AQSGQYESAANALFSLSRRSELASERPQIKYILGTMLVELKLYQTAAFQFVDVIRMKHPK HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YSKMAIEKLSIVADSLGDDTILNYAISRVDLNDFPANLRDMINFRLGEIRLRNREFAKAA HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCHHHHHHH DLFSRVSPTSSYYFQALYAKGLAELEANQPSLAVGTFNKMLDARRRAPVTDTNKVAAQMG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHH LARALYQKQDWDASVEAYSQVPRDTLMWHDAVFEQSWAMLRAARFRSSLSNFQTLHSAYY HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDFYMPESLLLRSIVYLYICKYDEMEKVLSLFEKTYGPVRSKIGDFLKSSNEAGTFYAEV HHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHH EKAHLMKTTDKSANLRLPYIVLRNVLDQGDVKRSMHYLEKLNQEKARVESNSAFRASPLG HHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC QYSLKILANRSKNTKFAIGDMVKAHLLNMRVELRDLYEQAGFIRYEMITGRKESIKKKIA HHHHHHEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHC GKDISGDQIDENVNRKFYIENGYEYYPFQGEYWLDEVGNYHYLGKQSCE CCCCCCCHHHCCCCCEEEEECCEEECCCCCCHHHHHCCCEEECCCCCCC >Mature Secondary Structure MKKLLPLLIAASIAVPVVGDAQQRKTLKKQPAPARRAAPLVSGNTREATLRNQLSNALRM CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH AQSGQYESAANALFSLSRRSELASERPQIKYILGTMLVELKLYQTAAFQFVDVIRMKHPK HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YSKMAIEKLSIVADSLGDDTILNYAISRVDLNDFPANLRDMINFRLGEIRLRNREFAKAA HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCHHHHHHH DLFSRVSPTSSYYFQALYAKGLAELEANQPSLAVGTFNKMLDARRRAPVTDTNKVAAQMG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHH LARALYQKQDWDASVEAYSQVPRDTLMWHDAVFEQSWAMLRAARFRSSLSNFQTLHSAYY HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDFYMPESLLLRSIVYLYICKYDEMEKVLSLFEKTYGPVRSKIGDFLKSSNEAGTFYAEV HHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHH EKAHLMKTTDKSANLRLPYIVLRNVLDQGDVKRSMHYLEKLNQEKARVESNSAFRASPLG HHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC QYSLKILANRSKNTKFAIGDMVKAHLLNMRVELRDLYEQAGFIRYEMITGRKESIKKKIA HHHHHHEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHC GKDISGDQIDENVNRKFYIENGYEYYPFQGEYWLDEVGNYHYLGKQSCE CCCCCCCHHHCCCCCEEEEECCEEECCCCCCHHHHHCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA