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The map label for this gene is cpaF [C]

Identifier: 42522370

GI number: 42522370

Start: 743493

End: 744599

Strand: Direct

Name: cpaF [C]

Synonym: Bd0793

Alternate gene names: 42522370

Gene position: 743493-744599 (Clockwise)

Preceding gene: 42522369

Following gene: 42522371

Centisome position: 19.65

GC content: 52.03

Gene sequence:

>1107_bases
ATGTCTGACCAGTCGAACGTTTTCAAACAGACCATTCAGCAGAATCTCGGTCCTGTTGCGAAATACCTGGACGACAAGGG
TGTGTCCGAAATTCTTATCAATGGCCATAAGGAAATCTTCGTGGAAAGAAAGGGTAAGCTCGAAAGAGTTTCCGAGTCTT
TCCCGTCCGAAGATGATCTGCGTGCCGCGGTGAACAGCATCGCGCAAAGTGTGGGTCGACGTATCGATGATGAATCGCCT
CGTCTGGATGCGCGTCTTCCGGATGGTTCCCGTATTGCGGCGGTGATCCCGCCGATGTCCCGCAAGGGCACGACTCTTTC
CATTCGTAAATTCACGAACAACAAAATCACTTTTGCCGACTATATCAAATTTGGTGCGATCACCGAGGATGGAGCACGTT
TCCTGGACATCTGCATGTTCCTGGGAAAAAACATCATCGTCAGCGGTGGTACGGGTTCCGGTAAAACGACATTGCTTTCA
CTTTTATGCACGCGCATTCCGAAAGGTCAGCGAGTGATGGTGATTGAAGACTCCTCCGAGCTGCAGGTTGATTACGAGCA
CGTGGTGATGTTTGAAACCCGCCAGGCCGATGCCATGGGTAAGGGTGAAGTCACGATCAAGGATCTTTTAAAGTCCGCCC
TGCGTTTGCGTCCCGACCGAATCATCGTGGGGGAGGTTCGTTCCAGTGAAGCGATGGAACTGCTGAACGCCATGAATACC
GGTCACAAAGGATGTATGGGAACGGTCCACGCCAACACGCCAGAAGATGCGATTGTGCGGTTGGAAGCCCTGGCTCAAGG
TGGTGATGCGAAGATCAGTGAGAAGGCTTTGCGCTCTCAGGTGTCTTCGGCGATTGAAATTATTATCCAGGTCTCACGTT
TTTCGGACGGATCTCGCCGTATCGCAGCAATCAGCGAAGTGCGCGGATTCAGTGCGGATGGTTCATACAACGTGATCCCG
ATCTTTGAAATGTCCCGCCTAACACGCCGTCCCGACGGAACCCTGGAAGGAAAACTCCAGCCCACAGGCAACGTGCCGTC
GTTCATGGAAGAAATCATCGACAACAACCTGCCCTTCCCAAAATCCAAGTTCGCAAAAGTCGCCTAA

Upstream 100 bases:

>100_bases
GGAAACGGCCGTGCAGGGGAAGTTCATTATTTATTCCGATGCGGCAGCGCCTGATCGCATGCCGGCGTCCAAGTAATTTT
TTATCCGAGGAAAGGCACCC

Downstream 100 bases:

>100_bases
AAGGTGCCTGGTGACTTTTTACACCTACGCCGCGTTAATCCCATAACGCAGTTGCTCTGCACAGAGTGAAATATCGTTCG
TTTTTTTGTGTTTAAAGAGT

Product: cpaF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSDQSNVFKQTIQQNLGPVAKYLDDKGVSEILINGHKEIFVERKGKLERVSESFPSEDDLRAAVNSIAQSVGRRIDDESP
RLDARLPDGSRIAAVIPPMSRKGTTLSIRKFTNNKITFADYIKFGAITEDGARFLDICMFLGKNIIVSGGTGSGKTTLLS
LLCTRIPKGQRVMVIEDSSELQVDYEHVVMFETRQADAMGKGEVTIKDLLKSALRLRPDRIIVGEVRSSEAMELLNAMNT
GHKGCMGTVHANTPEDAIVRLEALAQGGDAKISEKALRSQVSSAIEIIIQVSRFSDGSRRIAAISEVRGFSADGSYNVIP
IFEMSRLTRRPDGTLEGKLQPTGNVPSFMEEIIDNNLPFPKSKFAKVA

Sequences:

>Translated_368_residues
MSDQSNVFKQTIQQNLGPVAKYLDDKGVSEILINGHKEIFVERKGKLERVSESFPSEDDLRAAVNSIAQSVGRRIDDESP
RLDARLPDGSRIAAVIPPMSRKGTTLSIRKFTNNKITFADYIKFGAITEDGARFLDICMFLGKNIIVSGGTGSGKTTLLS
LLCTRIPKGQRVMVIEDSSELQVDYEHVVMFETRQADAMGKGEVTIKDLLKSALRLRPDRIIVGEVRSSEAMELLNAMNT
GHKGCMGTVHANTPEDAIVRLEALAQGGDAKISEKALRSQVSSAIEIIIQVSRFSDGSRRIAAISEVRGFSADGSYNVIP
IFEMSRLTRRPDGTLEGKLQPTGNVPSFMEEIIDNNLPFPKSKFAKVA
>Mature_367_residues
SDQSNVFKQTIQQNLGPVAKYLDDKGVSEILINGHKEIFVERKGKLERVSESFPSEDDLRAAVNSIAQSVGRRIDDESPR
LDARLPDGSRIAAVIPPMSRKGTTLSIRKFTNNKITFADYIKFGAITEDGARFLDICMFLGKNIIVSGGTGSGKTTLLSL
LCTRIPKGQRVMVIEDSSELQVDYEHVVMFETRQADAMGKGEVTIKDLLKSALRLRPDRIIVGEVRSSEAMELLNAMNTG
HKGCMGTVHANTPEDAIVRLEALAQGGDAKISEKALRSQVSSAIEIIIQVSRFSDGSRRIAAISEVRGFSADGSYNVIPI
FEMSRLTRRPDGTLEGKLQPTGNVPSFMEEIIDNNLPFPKSKFAKVA

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 40347; Mature: 40216

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQSNVFKQTIQQNLGPVAKYLDDKGVSEILINGHKEIFVERKGKLERVSESFPSEDDL
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHEEEECCCHHHHHHHHCCCHHHH
RAAVNSIAQSVGRRIDDESPRLDARLPDGSRIAAVIPPMSRKGTTLSIRKFTNNKITFAD
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEHHH
YIKFGAITEDGARFLDICMFLGKNIIVSGGTGSGKTTLLSLLCTRIPKGQRVMVIEDSSE
HHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
LQVDYEHVVMFETRQADAMGKGEVTIKDLLKSALRLRPDRIIVGEVRSSEAMELLNAMNT
CEEEEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC
GHKGCMGTVHANTPEDAIVRLEALAQGGDAKISEKALRSQVSSAIEIIIQVSRFSDGSRR
CCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IAAISEVRGFSADGSYNVIPIFEMSRLTRRPDGTLEGKLQPTGNVPSFMEEIIDNNLPFP
HHHHHHHCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCC
KSKFAKVA
HHHHCCCC
>Mature Secondary Structure 
SDQSNVFKQTIQQNLGPVAKYLDDKGVSEILINGHKEIFVERKGKLERVSESFPSEDDL
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHEEEECCCHHHHHHHHCCCHHHH
RAAVNSIAQSVGRRIDDESPRLDARLPDGSRIAAVIPPMSRKGTTLSIRKFTNNKITFAD
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEHHH
YIKFGAITEDGARFLDICMFLGKNIIVSGGTGSGKTTLLSLLCTRIPKGQRVMVIEDSSE
HHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
LQVDYEHVVMFETRQADAMGKGEVTIKDLLKSALRLRPDRIIVGEVRSSEAMELLNAMNT
CEEEEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC
GHKGCMGTVHANTPEDAIVRLEALAQGGDAKISEKALRSQVSSAIEIIIQVSRFSDGSRR
CCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IAAISEVRGFSADGSYNVIPIFEMSRLTRRPDGTLEGKLQPTGNVPSFMEEIIDNNLPFP
HHHHHHHCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCC
KSKFAKVA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]