| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is sfsA
Identifier: 42522360
GI number: 42522360
Start: 736824
End: 737555
Strand: Direct
Name: sfsA
Synonym: Bd0781
Alternate gene names: 42522360
Gene position: 736824-737555 (Clockwise)
Preceding gene: 42522353
Following gene: 42522361
Centisome position: 19.48
GC content: 51.78
Gene sequence:
>732_bases ATGAAGTTTCACAGCAAGCTGCAAGAGGGTATTTTTTTAAAGCGCTATAAGCGCTTCTTTGCGGATATTGAATTTCAGGG GCAGCAGGTGACGGCCCATGTTCCCAACACCGGCAGTCTAAAAAGTGTGAACAATCCGGGACAGCACTGTCTGTTTTCTG AAAGCACCAATCCGGAGCGTAAGCTGAAGTACACTCTGGAAATGATCAAGTCCCCGACGGGATCCTGGGTTGGGGTTAAT ACGGCGACTCCAAACACAGTGGTGCGTGAAACCCTTCATCATGTGGTCGGTCACAAAAAAGAGGTGATTGGCGGCTTTGC CCACTGGGCGGCCTTTGATGAAGTGAAGCCGGAATACAAAATCAGCGCGGAAACCCGCCTGGATTTTGCCCTGAAGAAAA ACAACAGCGATAAAATGCATTTTATCGAAGTGAAAAACGTGACCCTGGCTGAAGAAGGGACCGCCAAGTTCCCGGACGCT GTGACCGAGCGCGGGCAAAAGCATCTGCGTGAGCTTATGGCATTGATGGAGCAGGGGCACACGGCGGAAATCGTCTTCAC AATCCAGCGTCACGACTGCGGTTCGTTCTCTCCGGCGGATGACATTGATCCGGAATATGGCCGTCTGCTGCGTGAGGCCT ATCAAAAAGGGCTGCGTGTTTCGCCTTTTGTGCTGGATCTGACTCCGGAGTCCGTCGAGTTGTCTGAGACAGTTCTGCCG CTAAAAATGTAG
Upstream 100 bases:
>100_bases AGGTTGCGGGCGGGGCAGGGGGCTTTGAAAGGGGTCGACAAAAGGCCCTTTCAGGGACTAATTTCAGGGTGTTGATTTTG ACTTGAAGATTGGGGTTCCT
Downstream 100 bases:
>100_bases AGCGCCACGGCACGACCGCCAGGTGTTCGACGATTTTTCTGGACCTGTTTTTTGGTCGGGAAAGTGTCAAGAAAGATGAC ACTTTCCCTCTGAAAGGCTG
Product: sugar fermentation stimulation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MKFHSKLQEGIFLKRYKRFFADIEFQGQQVTAHVPNTGSLKSVNNPGQHCLFSESTNPERKLKYTLEMIKSPTGSWVGVN TATPNTVVRETLHHVVGHKKEVIGGFAHWAAFDEVKPEYKISAETRLDFALKKNNSDKMHFIEVKNVTLAEEGTAKFPDA VTERGQKHLRELMALMEQGHTAEIVFTIQRHDCGSFSPADDIDPEYGRLLREAYQKGLRVSPFVLDLTPESVELSETVLP LKM
Sequences:
>Translated_243_residues MKFHSKLQEGIFLKRYKRFFADIEFQGQQVTAHVPNTGSLKSVNNPGQHCLFSESTNPERKLKYTLEMIKSPTGSWVGVN TATPNTVVRETLHHVVGHKKEVIGGFAHWAAFDEVKPEYKISAETRLDFALKKNNSDKMHFIEVKNVTLAEEGTAKFPDA VTERGQKHLRELMALMEQGHTAEIVFTIQRHDCGSFSPADDIDPEYGRLLREAYQKGLRVSPFVLDLTPESVELSETVLP LKM >Mature_243_residues MKFHSKLQEGIFLKRYKRFFADIEFQGQQVTAHVPNTGSLKSVNNPGQHCLFSESTNPERKLKYTLEMIKSPTGSWVGVN TATPNTVVRETLHHVVGHKKEVIGGFAHWAAFDEVKPEYKISAETRLDFALKKNNSDKMHFIEVKNVTLAEEGTAKFPDA VTERGQKHLRELMALMEQGHTAEIVFTIQRHDCGSFSPADDIDPEYGRLLREAYQKGLRVSPFVLDLTPESVELSETVLP LKM
Specific function: Probable Regulatory Factor Involved In Maltose Metabolism. [C]
COG id: COG1489
COG function: function code R; DNA-binding protein, stimulates sugar fermentation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sfsA family
Homologues:
Organism=Escherichia coli, GI1786340, Length=245, Percent_Identity=37.1428571428571, Blast_Score=162, Evalue=2e-41,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): SFSA_BDEBA (P61662)
Other databases:
- EMBL: BX842648 - RefSeq: NP_967740.1 - GeneID: 2733611 - GenomeReviews: BX842601_GR - KEGG: bba:Bd0781 - NMPDR: fig|264462.1.peg.710 - HOGENOM: HBG655520 - OMA: NTGSMLN - PhylomeDB: P61662 - BioCyc: BBAC264462:BD0781-MONOMER - HAMAP: MF_00095 - InterPro: IPR005224 - TIGRFAMs: TIGR00230
Pfam domain/function: PF03749 SfsA
EC number: NA
Molecular weight: Translated: 27526; Mature: 27526
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFHSKLQEGIFLKRYKRFFADIEFQGQQVTAHVPNTGSLKSVNNPGQHCLFSESTNPER CCHHHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH KLKYTLEMIKSPTGSWVGVNTATPNTVVRETLHHVVGHKKEVIGGFAHWAAFDEVKPEYK HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEE ISAETRLDFALKKNNSDKMHFIEVKNVTLAEEGTAKFPDAVTERGQKHLRELMALMEQGH EECCCEEEEEEECCCCCCEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC TAEIVFTIQRHDCGSFSPADDIDPEYGRLLREAYQKGLRVSPFVLDLTPESVELSETVLP EEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCC LKM CCC >Mature Secondary Structure MKFHSKLQEGIFLKRYKRFFADIEFQGQQVTAHVPNTGSLKSVNNPGQHCLFSESTNPER CCHHHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH KLKYTLEMIKSPTGSWVGVNTATPNTVVRETLHHVVGHKKEVIGGFAHWAAFDEVKPEYK HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEE ISAETRLDFALKKNNSDKMHFIEVKNVTLAEEGTAKFPDAVTERGQKHLRELMALMEQGH EECCCEEEEEEECCCCCCEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC TAEIVFTIQRHDCGSFSPADDIDPEYGRLLREAYQKGLRVSPFVLDLTPESVELSETVLP EEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCC LKM CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA