| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522353
Identifier: 42522353
GI number: 42522353
Start: 730561
End: 731292
Strand: Direct
Name: 42522353
Synonym: Bd0773
Alternate gene names: NA
Gene position: 730561-731292 (Clockwise)
Preceding gene: 42522351
Following gene: 42522360
Centisome position: 19.31
GC content: 53.83
Gene sequence:
>732_bases ATGATCTCATCCATGATTCAAAAGTCAGTGCTGTTGGCTGCCACGGTGTTGACCCTGGCCGCTTGTTCGCAGGAAGGCCT TATTAAAGGGGCGGCCCTTTCCACCAAAATCACCCAAGGCGACGTGTATGTGTCGCTAAAAACCCAGGTGGACTCCAACA ACCTGCAGATCATGAGTGTTCAGCTGCCGATTTATAATCCGGAAAACCCAGTGGAGATGCTGGGAATGCTCAATGTCTCG TCCTTGGTGCCGGGGATTACCGATATCGATCTGGTATTGAACTTTTCCCGGGTGACCAAGATTCCCGCTTTGCAGGCCGA AAAAGGACTGCCCAACGGAACCCTGTTCCCGGTCATGGGAGTTAAGGCGGACGAGTGGTATTCCATCCCCCTCAGCGACA GCCGTGTCTCGAAGCTGTATTTGAATCTGGATTTGCAGGCTCCCAAGGTGGTCCTGGGATATGCACTGGGTACAGATTCG CTCAGTGCCGGGATCGTCGCGAATCTGTTCACCGGGTTTAGTGCTCAAGGGGTGACGGGTTACGGAGGAGTTTACAGCGG ACTGTTGCCTGGCCAAAGCGGGGTGGCGGTGTTTGCCGACGTGAGTTCGATCTTAAAATCGTCCGCGCCGGGTGTGGCCT TTGTCGATCGCACATCGAAAAGCCGACAGAATAAAGTGGCTGAAAAACTGATGCAGTTGAATCAGCGCAAGTCCTTGTTG CGCGTTCGCTAG
Upstream 100 bases:
>100_bases TTCGACTTTGTAAAGATTTAAACAGCCCCCCTTTAGTCCAGTTGGCTTTTTCCGAAACTGGAGGGGCAAGTTTGTTCGTT CAACCAAGGAGTGCGTTTCA
Downstream 100 bases:
>100_bases AAAATCACTGGCGTTAAAGATAAAAAAAGCCGACCCTGCAAGGTCGGCTTTTTTGTTTGAATGTGTCTGAAAACTAGTAG CGGATCACTTCAAAGATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MISSMIQKSVLLAATVLTLAACSQEGLIKGAALSTKITQGDVYVSLKTQVDSNNLQIMSVQLPIYNPENPVEMLGMLNVS SLVPGITDIDLVLNFSRVTKIPALQAEKGLPNGTLFPVMGVKADEWYSIPLSDSRVSKLYLNLDLQAPKVVLGYALGTDS LSAGIVANLFTGFSAQGVTGYGGVYSGLLPGQSGVAVFADVSSILKSSAPGVAFVDRTSKSRQNKVAEKLMQLNQRKSLL RVR
Sequences:
>Translated_243_residues MISSMIQKSVLLAATVLTLAACSQEGLIKGAALSTKITQGDVYVSLKTQVDSNNLQIMSVQLPIYNPENPVEMLGMLNVS SLVPGITDIDLVLNFSRVTKIPALQAEKGLPNGTLFPVMGVKADEWYSIPLSDSRVSKLYLNLDLQAPKVVLGYALGTDS LSAGIVANLFTGFSAQGVTGYGGVYSGLLPGQSGVAVFADVSSILKSSAPGVAFVDRTSKSRQNKVAEKLMQLNQRKSLL RVR >Mature_243_residues MISSMIQKSVLLAATVLTLAACSQEGLIKGAALSTKITQGDVYVSLKTQVDSNNLQIMSVQLPIYNPENPVEMLGMLNVS SLVPGITDIDLVLNFSRVTKIPALQAEKGLPNGTLFPVMGVKADEWYSIPLSDSRVSKLYLNLDLQAPKVVLGYALGTDS LSAGIVANLFTGFSAQGVTGYGGVYSGLLPGQSGVAVFADVSSILKSSAPGVAFVDRTSKSRQNKVAEKLMQLNQRKSLL RVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25779; Mature: 25779
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISSMIQKSVLLAATVLTLAACSQEGLIKGAALSTKITQGDVYVSLKTQVDSNNLQIMSV CCHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEECCEEEEEEEEEECCCCEEEEEE QLPIYNPENPVEMLGMLNVSSLVPGITDIDLVLNFSRVTKIPALQAEKGLPNGTLFPVMG EEECCCCCCHHHHHHHHCHHHHCCCCCCHHHEEEHHHHHCCCCCHHHCCCCCCCEEEEEC VKADEWYSIPLSDSRVSKLYLNLDLQAPKVVLGYALGTDSLSAGIVANLFTGFSAQGVTG CCCCCEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC YGGVYSGLLPGQSGVAVFADVSSILKSSAPGVAFVDRTSKSRQNKVAEKLMQLNQRKSLL CCCHHHCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH RVR CCC >Mature Secondary Structure MISSMIQKSVLLAATVLTLAACSQEGLIKGAALSTKITQGDVYVSLKTQVDSNNLQIMSV CCHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEECCEEEEEEEEEECCCCEEEEEE QLPIYNPENPVEMLGMLNVSSLVPGITDIDLVLNFSRVTKIPALQAEKGLPNGTLFPVMG EEECCCCCCHHHHHHHHCHHHHCCCCCCHHHEEEHHHHHCCCCCHHHCCCCCCCEEEEEC VKADEWYSIPLSDSRVSKLYLNLDLQAPKVVLGYALGTDSLSAGIVANLFTGFSAQGVTG CCCCCEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC YGGVYSGLLPGQSGVAVFADVSSILKSSAPGVAFVDRTSKSRQNKVAEKLMQLNQRKSLL CCCHHHCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH RVR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA