| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522341
Identifier: 42522341
GI number: 42522341
Start: 719558
End: 720343
Strand: Direct
Name: 42522341
Synonym: Bd0758
Alternate gene names: NA
Gene position: 719558-720343 (Clockwise)
Preceding gene: 42522340
Following gene: 42522343
Centisome position: 19.02
GC content: 53.82
Gene sequence:
>786_bases TTGAGTCCTGAGCAGACCTCAGCATTTAATCCCGCAAAAACACAGAAAATAGTCCATACTGGTGGAATGAAACTCATCGG TTCTGTTATTGCTTTCATGTTGTTGGGTGTTCAATCGCAAGCGCAAGACTGGCGCACCGCCACTCGCGACAGTGCGCATC TGGCGCCGACTCCTCAGGAGGAAAAAGGTGCTGTGGTGCAGGTGTATGCCGCCCGCACAGTCAGCTGGCGTGGTTACTTC GCGGTTCACTCCTGGATTGCGACCAAAGCCAAAGGTGCTGATCACTACAGGACTTATCATGTGATCGGCTGGCGTGTGAA AAGAGGCCTTGAAGCCGTGCGAATTGAAACCGACATTCCAGATCGTCACTGGTTTGGAGCCAAGCCCGATTTGATTGAAG ACCTGCGCGGAGCCGAGGCCGAAGCGGCCATTCCGCAGATCGACAAGCTGGCCAGGGACTATGCTTACAAGAACACCTAT CGCGCTTATCCCGGGCCCAACAGCAACACCTTCATTTCCCATATCATCCGCAATGTCCCTGAGCTGAAGGTGGAACTGCC TCCGCATGCCATTGGCAAGGACTGGATCAATCAGGCGGACCTGGTTGGTTGGAGTGAATCCAAAACCGGAGTGCAGTTTT CCTTGTTTGGAATGCTGGGTCTGACCGTGGGATTGGGTGAAGGTGTAGAGTTGAATCTGCTGGGACTTAATTTCGGTGTT GATTTCATGCGGCCGGCGCTGAAGCTGCCGATGGTGGGTCGGGTCGGAATGACCGACAAACCCTAA
Upstream 100 bases:
>100_bases CGAATTCTCACTTGGGGCATGTGTTTGATGACGGGCCGGCGCCCACGGGTCTTCGTTATTGCATCAATTCGGCCTCGTTG AAATTCATTCCGCGCAAAGG
Downstream 100 bases:
>100_bases TTGCGGTTGACCAGCGCAGGGGGGCTGTAGCGCACGGTGAATGAGAACACCAGATGAATGTAGCCATCCTCTTTCACCAT CTCTTGTGGTGGATTCGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSPEQTSAFNPAKTQKIVHTGGMKLIGSVIAFMLLGVQSQAQDWRTATRDSAHLAPTPQEEKGAVVQVYAARTVSWRGYF AVHSWIATKAKGADHYRTYHVIGWRVKRGLEAVRIETDIPDRHWFGAKPDLIEDLRGAEAEAAIPQIDKLARDYAYKNTY RAYPGPNSNTFISHIIRNVPELKVELPPHAIGKDWINQADLVGWSESKTGVQFSLFGMLGLTVGLGEGVELNLLGLNFGV DFMRPALKLPMVGRVGMTDKP
Sequences:
>Translated_261_residues MSPEQTSAFNPAKTQKIVHTGGMKLIGSVIAFMLLGVQSQAQDWRTATRDSAHLAPTPQEEKGAVVQVYAARTVSWRGYF AVHSWIATKAKGADHYRTYHVIGWRVKRGLEAVRIETDIPDRHWFGAKPDLIEDLRGAEAEAAIPQIDKLARDYAYKNTY RAYPGPNSNTFISHIIRNVPELKVELPPHAIGKDWINQADLVGWSESKTGVQFSLFGMLGLTVGLGEGVELNLLGLNFGV DFMRPALKLPMVGRVGMTDKP >Mature_260_residues SPEQTSAFNPAKTQKIVHTGGMKLIGSVIAFMLLGVQSQAQDWRTATRDSAHLAPTPQEEKGAVVQVYAARTVSWRGYFA VHSWIATKAKGADHYRTYHVIGWRVKRGLEAVRIETDIPDRHWFGAKPDLIEDLRGAEAEAAIPQIDKLARDYAYKNTYR AYPGPNSNTFISHIIRNVPELKVELPPHAIGKDWINQADLVGWSESKTGVQFSLFGMLGLTVGLGEGVELNLLGLNFGVD FMRPALKLPMVGRVGMTDKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28893; Mature: 28762
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPEQTSAFNPAKTQKIVHTGGMKLIGSVIAFMLLGVQSQAQDWRTATRDSAHLAPTPQE CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC EKGAVVQVYAARTVSWRGYFAVHSWIATKAKGADHYRTYHVIGWRVKRGLEAVRIETDIP CCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCEEEEEECCCC DRHWFGAKPDLIEDLRGAEAEAAIPQIDKLARDYAYKNTYRAYPGPNSNTFISHIIRNVP CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHCCC ELKVELPPHAIGKDWINQADLVGWSESKTGVQFSLFGMLGLTVGLGEGVELNLLGLNFGV CEEEECCCCCCCHHHCCHHHCCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEEEECCCH DFMRPALKLPMVGRVGMTDKP HHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SPEQTSAFNPAKTQKIVHTGGMKLIGSVIAFMLLGVQSQAQDWRTATRDSAHLAPTPQE CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC EKGAVVQVYAARTVSWRGYFAVHSWIATKAKGADHYRTYHVIGWRVKRGLEAVRIETDIP CCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCEEEEEECCCC DRHWFGAKPDLIEDLRGAEAEAAIPQIDKLARDYAYKNTYRAYPGPNSNTFISHIIRNVP CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHCCC ELKVELPPHAIGKDWINQADLVGWSESKTGVQFSLFGMLGLTVGLGEGVELNLLGLNFGV CEEEECCCCCCCHHHCCHHHCCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEEEECCCH DFMRPALKLPMVGRVGMTDKP HHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA