| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522269
Identifier: 42522269
GI number: 42522269
Start: 631525
End: 632508
Strand: Direct
Name: 42522269
Synonym: Bd0682
Alternate gene names: NA
Gene position: 631525-632508 (Clockwise)
Preceding gene: 42522268
Following gene: 42522272
Centisome position: 16.69
GC content: 46.54
Gene sequence:
>984_bases ATGATCTGCACGAAATTTTGCGAAAAAATTTTGATCACCTGTGTGACGCTTTTTGCGTTGAATGCCTTTGCATTGGATGC TGGTGCCGAAAAGTTAAAGCTGCCTCAGCTGCCGCAGATCAAGGCGCCTGAAGCCGTTCGTATTGAAGTTAAGCCCGTGG CTCGACCGGAAGGATCTTTGATCCTGGACAATGCCCTGGGTAAAAATCTTAAGGACTTTCAGACTTTTTTGAAAACTCAG GGGCCTCGTACTGGAGGCGGTGGAAATTCCTGTGCTCTTTCCATTCACCAGAACACAGAGAAGCTTGTCAGTTTGCTTTC TGAGATGCCCACGCTGTTGAGCGAGGGGCAAAGAGCTTTCTTGCTGCACAAGATATCCGTGGCTAAGTTTTACCTAAGTG AAGATCTGACTCTGGATGGGCAGACAAAGGACGCCATTAACTATCCGAACACCAATGAGATTTATTTATCCAATAAGCTA TGCGGGCTGGACCTGCTGGATGTGCAGAGCCGTGCGATGGCTATCCTTCTGCATGAATATCTGGGGCTTGCTAACATTGA TGATCGTCGGTACCAGATATCCGGTGCCTTCCTGCAAAACTATTCAACCTTCAATGCCCGTGGATATACCTTCACCGCTG ATAATTCATATAAAGCACATACCGGACAATGTGTTCAGTCTGTTCTTCAGATGCAGCAAATCGGAAACAATTTAATTATT TCAACTTCGTCGAAACCTGGCGCGAGGATCATCCCATTAACGCGCCAACATGTTGAAGAGTTCCAGGCCTTGGGTGAACG AATTTGGGGAGCTGAAAAGACGGTCACCGTAGCCGACAGGGAAATGGGTGTGGACTATGTGTTTTCCAGCGAAAGTTGCG GCACCGTAAGTTGTGAATACTTAAGAATTAAAAAGGGCGATGTAACCATAAAGACTATTAAGAATGCCACCAATGGGCTG TCGACTATTGATTGCAAACGCTAG
Upstream 100 bases:
>100_bases TATCGATCTTTTCCGGGTTTAAGCGGCTGTCTCATTTTGAGACATGGCCGTGGTATGTCCTTTGCTTTCTTAAAAACTAA AGAATGCAAAGGACACTTCA
Downstream 100 bases:
>100_bases TGGGCCCAGATTTTGGACATAAAAAAAGCCGACTTATTCAGTCAGCTTTCTTTGCGGATCTTTCCAGAGGAAAGATTTGG TGCCCCGCGAGGGACTTGAA
Product: putative yir2 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MICTKFCEKILITCVTLFALNAFALDAGAEKLKLPQLPQIKAPEAVRIEVKPVARPEGSLILDNALGKNLKDFQTFLKTQ GPRTGGGGNSCALSIHQNTEKLVSLLSEMPTLLSEGQRAFLLHKISVAKFYLSEDLTLDGQTKDAINYPNTNEIYLSNKL CGLDLLDVQSRAMAILLHEYLGLANIDDRRYQISGAFLQNYSTFNARGYTFTADNSYKAHTGQCVQSVLQMQQIGNNLII STSSKPGARIIPLTRQHVEEFQALGERIWGAEKTVTVADREMGVDYVFSSESCGTVSCEYLRIKKGDVTIKTIKNATNGL STIDCKR
Sequences:
>Translated_327_residues MICTKFCEKILITCVTLFALNAFALDAGAEKLKLPQLPQIKAPEAVRIEVKPVARPEGSLILDNALGKNLKDFQTFLKTQ GPRTGGGGNSCALSIHQNTEKLVSLLSEMPTLLSEGQRAFLLHKISVAKFYLSEDLTLDGQTKDAINYPNTNEIYLSNKL CGLDLLDVQSRAMAILLHEYLGLANIDDRRYQISGAFLQNYSTFNARGYTFTADNSYKAHTGQCVQSVLQMQQIGNNLII STSSKPGARIIPLTRQHVEEFQALGERIWGAEKTVTVADREMGVDYVFSSESCGTVSCEYLRIKKGDVTIKTIKNATNGL STIDCKR >Mature_327_residues MICTKFCEKILITCVTLFALNAFALDAGAEKLKLPQLPQIKAPEAVRIEVKPVARPEGSLILDNALGKNLKDFQTFLKTQ GPRTGGGGNSCALSIHQNTEKLVSLLSEMPTLLSEGQRAFLLHKISVAKFYLSEDLTLDGQTKDAINYPNTNEIYLSNKL CGLDLLDVQSRAMAILLHEYLGLANIDDRRYQISGAFLQNYSTFNARGYTFTADNSYKAHTGQCVQSVLQMQQIGNNLII STSSKPGARIIPLTRQHVEEFQALGERIWGAEKTVTVADREMGVDYVFSSESCGTVSCEYLRIKKGDVTIKTIKNATNGL STIDCKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36052; Mature: 36052
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICTKFCEKILITCVTLFALNAFALDAGAEKLKLPQLPQIKAPEAVRIEVKPVARPEGSL CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCE ILDNALGKNLKDFQTFLKTQGPRTGGGGNSCALSIHQNTEKLVSLLSEMPTLLSEGQRAF EEEHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEE LLHKISVAKFYLSEDLTLDGQTKDAINYPNTNEIYLSNKLCGLDLLDVQSRAMAILLHEY EEEHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH LGLANIDDRRYQISGAFLQNYSTFNARGYTFTADNSYKAHTGQCVQSVLQMQQIGNNLII HCCCCCCCCEEEEEHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE STSSKPGARIIPLTRQHVEEFQALGERIWGAEKTVTVADREMGVDYVFSSESCGTVSCEY EECCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCEEEECCCCCCCEEEEE LRIKKGDVTIKTIKNATNGLSTIDCKR EEEECCCEEEEEECCCCCCCCEECCCC >Mature Secondary Structure MICTKFCEKILITCVTLFALNAFALDAGAEKLKLPQLPQIKAPEAVRIEVKPVARPEGSL CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCE ILDNALGKNLKDFQTFLKTQGPRTGGGGNSCALSIHQNTEKLVSLLSEMPTLLSEGQRAF EEEHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEE LLHKISVAKFYLSEDLTLDGQTKDAINYPNTNEIYLSNKLCGLDLLDVQSRAMAILLHEY EEEHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH LGLANIDDRRYQISGAFLQNYSTFNARGYTFTADNSYKAHTGQCVQSVLQMQQIGNNLII HCCCCCCCCEEEEEHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE STSSKPGARIIPLTRQHVEEFQALGERIWGAEKTVTVADREMGVDYVFSSESCGTVSCEY EECCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCEEEECCCCCCCEEEEE LRIKKGDVTIKTIKNATNGLSTIDCKR EEEECCCEEEEEECCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA