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The map label for this gene is pdtaR [H]

Identifier: 42522212

GI number: 42522212

Start: 580338

End: 580685

Strand: Direct

Name: pdtaR [H]

Synonym: Bd0621

Alternate gene names: 42522212

Gene position: 580338-580685 (Clockwise)

Preceding gene: 42522211

Following gene: 42522213

Centisome position: 15.34

GC content: 50.0

Gene sequence:

>348_bases
TTGAAGATTTTAATTGTTGATGATGAAGCTCTGGTCCGCCGCTCTTTGAGCCGTGCCTTGAAAGGCAAGGGTCATGAAGT
GCTGGAGGCCGGTGATGGCAATGAAGGCCTGCAACTGTGGCAGACTTCAAATCCGGATCTGGTGTTTTTGGACGTGCTGA
TGCCGGGTCGTACCGGTCCTGAAGTTTTGAAGGAAATGCGCGATCAATCCAAGGCCAAGGTGATTCTGATGTCGGCTTTC
GCCGGTGAACACAACATGGAAACCGCTCAGCAGATGGGCGCGAATCTTTTTGTGCCGAAGCCTTTTGAAGATATTTTTGC
CGTTGTGAAAATGGCAGAGGATTTGTAG

Upstream 100 bases:

>100_bases
CTAAGTCAGTCATTGAAAAATTCGGAGGCACCATCGAGTTCCGAAACGTGGATCCCCACGGGACCTGTTTCACGATCGTG
CTTCCGCAAAGGAATGCGCC

Downstream 100 bases:

>100_bases
TCATGAGAATTATTGCGGGGAAATATCGTGGACATCAGCTGGTGGCATTTGATGCCGACCACATCCGCCCCACAACGGAC
CGGGTGAAAGAAACCCTGTT

Product: putative response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKILIVDDEALVRRSLSRALKGKGHEVLEAGDGNEGLQLWQTSNPDLVFLDVLMPGRTGPEVLKEMRDQSKAKVILMSAF
AGEHNMETAQQMGANLFVPKPFEDIFAVVKMAEDL

Sequences:

>Translated_115_residues
MKILIVDDEALVRRSLSRALKGKGHEVLEAGDGNEGLQLWQTSNPDLVFLDVLMPGRTGPEVLKEMRDQSKAKVILMSAF
AGEHNMETAQQMGANLFVPKPFEDIFAVVKMAEDL
>Mature_115_residues
MKILIVDDEALVRRSLSRALKGKGHEVLEAGDGNEGLQLWQTSNPDLVFLDVLMPGRTGPEVLKEMRDQSKAKVILMSAF
AGEHNMETAQQMGANLFVPKPFEDIFAVVKMAEDL

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=103, Percent_Identity=42.7184466019417, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1786911, Length=100, Percent_Identity=39, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI1790863, Length=100, Percent_Identity=31, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1790299, Length=112, Percent_Identity=33.9285714285714, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 12725; Mature: 12725

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIVDDEALVRRSLSRALKGKGHEVLEAGDGNEGLQLWQTSNPDLVFLDVLMPGRTGP
CEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCH
EVLKEMRDQSKAKVILMSAFAGEHNMETAQQMGANLFVPKPFEDIFAVVKMAEDL
HHHHHHHCCHHHEEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKILIVDDEALVRRSLSRALKGKGHEVLEAGDGNEGLQLWQTSNPDLVFLDVLMPGRTGP
CEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCH
EVLKEMRDQSKAKVILMSAFAGEHNMETAQQMGANLFVPKPFEDIFAVVKMAEDL
HHHHHHHCCHHHEEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]