| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522081
Identifier: 42522081
GI number: 42522081
Start: 442835
End: 443995
Strand: Direct
Name: 42522081
Synonym: Bd0473
Alternate gene names: NA
Gene position: 442835-443995 (Clockwise)
Preceding gene: 42522080
Following gene: 42522082
Centisome position: 11.71
GC content: 52.97
Gene sequence:
>1161_bases ATGAGCGCAGCCCCTCAGGTGAAGGATTCCATGAAGTTTGATATCGAGATCATCAAAGGACCGCATATTGGTCAGAAGCT TTCTTTTGAAAAGGCTTCTGTATCCATGGGCCGTGGTCCCGAGAATGACATTGTCCTTTCCCAGGATCCGCGCGTCAGCC GTCAGCACGCGGAAATCAAACAGCGTGGCAATGAATTTGTGCTCGTCAATCTGAGTCAGAAAAACTTTGTGATGGTCAAT GGCCAGAGCATTCAATCCGAAGTTCTTACGAACGATTCGGTGATTCAGATTGGTGAGACAGAAATTCTGTTCAAAGTCGA CATGCCCGTGGTGCAGGCGCCTCCGCCAACACCGGCAGCGACACCGTCTCCGCTATTGACGCCAAATCCGTTCCCGGCGC CGACTCCACCGCGTCCGCAGCAGATGCCGGTCAGCAATCCGTTCCCGCAGGCTCAGACGCCGGCTTATCAGCAGCCTCGT CCGATGCCGGCGATGCCGAATCCTTCGATGCCTCCGGCACAGCCGATGGCTTATGGTGGGTACACTCCACCTCCGAATCA CGGCATGCCCAACATGGGGGCGCCGATGGGTGGACCTTCTGGTGGTGGCGGACTGCTTTCCAATCCGAAGGCCAGATTCT ATGGAATCATCGCCATTGTGGGTTTGGCAGCGTGGTTCTTCCTGTCGGATTCCGGCAATAAGAACAAAAAAGACCCGAAT GCATTCAGAACTTCAGCTCTGTCCATGGCGGACGTGGCCGAGGCCGAGAAACGTTCGCAGGAGCTTTTGACAATTAAAAA AGAAAAATACGACTCGGTTCAATACCGCCGGGCTCAGGAAAACTTCATCAAGGGCTTCCGCGACTTCCAGCAGGGCCAGT ATGCTCGTGCGCGCGAGGCGTTCCAGGTTGTTTTGAATCTGGATCCGGACAACGAGCTGGCAAAACGGTATTTCCATCTT TCGAAGATCAAGTTTGACGAGCTGGTGAAATTCAACATGATTCAAGGCAACCGATACCGCGAAAAAAAGAACTGGAGAAT GTGCCAGTCGAATTATTCCAACGTGATGACCATGCTTCAGCACCGCAAGGACGATCCTTCATTCAAGGAAGCCAAGCAGT TCTATGAAGAGTGCACGCTGAATCTGGAGGGCAGGTTCTAA
Upstream 100 bases:
>100_bases TCAGCGGGCACCTTTGTATTCTGAGCTGTCAGGCATTCTGCACAGGCCAGGAAGTGGATTATTATGTGATCACTGTGTCA CCAACTGAAGGAGGCTCGTG
Downstream 100 bases:
>100_bases TGGCTCTTCTGCGTGTGCGCCTGCGTGGCAAAACAGTCTGTGAAGTGAATCTGACGGAGGACCGCTCTTATGTGGCCGGC CGTAAAGAGGACTGTGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MSAAPQVKDSMKFDIEIIKGPHIGQKLSFEKASVSMGRGPENDIVLSQDPRVSRQHAEIKQRGNEFVLVNLSQKNFVMVN GQSIQSEVLTNDSVIQIGETEILFKVDMPVVQAPPPTPAATPSPLLTPNPFPAPTPPRPQQMPVSNPFPQAQTPAYQQPR PMPAMPNPSMPPAQPMAYGGYTPPPNHGMPNMGAPMGGPSGGGGLLSNPKARFYGIIAIVGLAAWFFLSDSGNKNKKDPN AFRTSALSMADVAEAEKRSQELLTIKKEKYDSVQYRRAQENFIKGFRDFQQGQYARAREAFQVVLNLDPDNELAKRYFHL SKIKFDELVKFNMIQGNRYREKKNWRMCQSNYSNVMTMLQHRKDDPSFKEAKQFYEECTLNLEGRF
Sequences:
>Translated_386_residues MSAAPQVKDSMKFDIEIIKGPHIGQKLSFEKASVSMGRGPENDIVLSQDPRVSRQHAEIKQRGNEFVLVNLSQKNFVMVN GQSIQSEVLTNDSVIQIGETEILFKVDMPVVQAPPPTPAATPSPLLTPNPFPAPTPPRPQQMPVSNPFPQAQTPAYQQPR PMPAMPNPSMPPAQPMAYGGYTPPPNHGMPNMGAPMGGPSGGGGLLSNPKARFYGIIAIVGLAAWFFLSDSGNKNKKDPN AFRTSALSMADVAEAEKRSQELLTIKKEKYDSVQYRRAQENFIKGFRDFQQGQYARAREAFQVVLNLDPDNELAKRYFHL SKIKFDELVKFNMIQGNRYREKKNWRMCQSNYSNVMTMLQHRKDDPSFKEAKQFYEECTLNLEGRF >Mature_385_residues SAAPQVKDSMKFDIEIIKGPHIGQKLSFEKASVSMGRGPENDIVLSQDPRVSRQHAEIKQRGNEFVLVNLSQKNFVMVNG QSIQSEVLTNDSVIQIGETEILFKVDMPVVQAPPPTPAATPSPLLTPNPFPAPTPPRPQQMPVSNPFPQAQTPAYQQPRP MPAMPNPSMPPAQPMAYGGYTPPPNHGMPNMGAPMGGPSGGGGLLSNPKARFYGIIAIVGLAAWFFLSDSGNKNKKDPNA FRTSALSMADVAEAEKRSQELLTIKKEKYDSVQYRRAQENFIKGFRDFQQGQYARAREAFQVVLNLDPDNELAKRYFHLS KIKFDELVKFNMIQGNRYREKKNWRMCQSNYSNVMTMLQHRKDDPSFKEAKQFYEECTLNLEGRF
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43266; Mature: 43135
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50006 FHA_DOMAIN ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAPQVKDSMKFDIEIIKGPHIGQKLSFEKASVSMGRGPENDIVLSQDPRVSRQHAEIK CCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH QRGNEFVLVNLSQKNFVMVNGQSIQSEVLTNDSVIQIGETEILFKVDMPVVQAPPPTPAA HCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCEEEECCEEEEEEECCCEEECCCCCCCC TPSPLLTPNPFPAPTPPRPQQMPVSNPFPQAQTPAYQQPRPMPAMPNPSMPPAQPMAYGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC YTPPPNHGMPNMGAPMGGPSGGGGLLSNPKARFYGIIAIVGLAAWFFLSDSGNKNKKDPN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH AFRTSALSMADVAEAEKRSQELLTIKKEKYDSVQYRRAQENFIKGFRDFQQGQYARAREA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH FQVVLNLDPDNELAKRYFHLSKIKFDELVKFNMIQGNRYREKKNWRMCQSNYSNVMTMLQ EEEEEECCCCHHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH HRKDDPSFKEAKQFYEECTLNLEGRF HCCCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SAAPQVKDSMKFDIEIIKGPHIGQKLSFEKASVSMGRGPENDIVLSQDPRVSRQHAEIK CCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH QRGNEFVLVNLSQKNFVMVNGQSIQSEVLTNDSVIQIGETEILFKVDMPVVQAPPPTPAA HCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCEEEECCEEEEEEECCCEEECCCCCCCC TPSPLLTPNPFPAPTPPRPQQMPVSNPFPQAQTPAYQQPRPMPAMPNPSMPPAQPMAYGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC YTPPPNHGMPNMGAPMGGPSGGGGLLSNPKARFYGIIAIVGLAAWFFLSDSGNKNKKDPN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH AFRTSALSMADVAEAEKRSQELLTIKKEKYDSVQYRRAQENFIKGFRDFQQGQYARAREA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH FQVVLNLDPDNELAKRYFHLSKIKFDELVKFNMIQGNRYREKKNWRMCQSNYSNVMTMLQ EEEEEECCCCHHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH HRKDDPSFKEAKQFYEECTLNLEGRF HCCCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA