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The map label for this gene is rcsF [H]

Identifier: 42522060

GI number: 42522060

Start: 424148

End: 424855

Strand: Direct

Name: rcsF [H]

Synonym: Bd0451

Alternate gene names: 42522060

Gene position: 424148-424855 (Clockwise)

Preceding gene: 42522056

Following gene: 42522061

Centisome position: 11.21

GC content: 52.82

Gene sequence:

>708_bases
ATGGAACCTATTGGCTACTTGGAGTCTTGCTTTAAAGATAAATTTGGAACACCGCGACAGCCTGGACTTGTTAAGCGGGC
TGAAGCACGTCTGAAAATCCGCGCGGATCTTCAGCCGGAGGAATCTTTGCAAGGGCTTGAGGGCTTCAGTCATGTATGGC
TGATTTGGGTCTTCCATCAAAACAAAGTGGCGCGCTTCCATGCGAAAGTGCATCCGCCGCGTTTGGGTGGGGAAAGCATG
GGGTTGTTTGCGACCCGCACTCCGCATCGTCCGAATCCGATCGGGCTGTCTTTGGTGGAACTGGTGCGCGTGGAAAAAGA
CGGCATCGTGGTCGCCGGAGCGGACCTGGTGGATGGCACTCCGATTTTGGATATCAAACCTTATCTGCCTGAGGTCGAAG
CCATTCCCACGGCCCGCACAGGCTGGCCGGCCGAGATCGCCAAGAACCCGATCACAGTGACATTCGACGACAAGGCCGAG
CAACTTTTACAAGAGTGGCAGGTAAGAAACCCTGACAAGGCTTTGCGTGAGGTGATTGAAGAAACCCTGAAGCAGGATCC
GCGTCCTGTCGTTTATCGTGGTTTTGAAGAGGGAGATTCCCCTTATAGAAGCTCGCACGCAGTCCGTTTGTACGACGTGG
ATGTTCATTTCAAATTTGAAAGCCCCACCCAGGTGCGCGTCTTCGATATTCTTTTTATGCATAATTAG

Upstream 100 bases:

>100_bases
TGCCTCCGTTTTATGCTTTCAGGGGCTCATGTCATCTGAAAAAGCCTTGTTATTCGAAAGTCCTTGACGCAGGAAGACCG
CGAGCGGTACGGGCTAGCGT

Downstream 100 bases:

>100_bases
TTGCAGTTGCCTTTTAATTGCGCAGCAGGCTACTCTCCGGATGAACCAATACAAGGGAGGATTCGTGAGAACACTGGAAA
CTGCTTCTCATTCTGAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEPIGYLESCFKDKFGTPRQPGLVKRAEARLKIRADLQPEESLQGLEGFSHVWLIWVFHQNKVARFHAKVHPPRLGGESM
GLFATRTPHRPNPIGLSLVELVRVEKDGIVVAGADLVDGTPILDIKPYLPEVEAIPTARTGWPAEIAKNPITVTFDDKAE
QLLQEWQVRNPDKALREVIEETLKQDPRPVVYRGFEEGDSPYRSSHAVRLYDVDVHFKFESPTQVRVFDILFMHN

Sequences:

>Translated_235_residues
MEPIGYLESCFKDKFGTPRQPGLVKRAEARLKIRADLQPEESLQGLEGFSHVWLIWVFHQNKVARFHAKVHPPRLGGESM
GLFATRTPHRPNPIGLSLVELVRVEKDGIVVAGADLVDGTPILDIKPYLPEVEAIPTARTGWPAEIAKNPITVTFDDKAE
QLLQEWQVRNPDKALREVIEETLKQDPRPVVYRGFEEGDSPYRSSHAVRLYDVDVHFKFESPTQVRVFDILFMHN
>Mature_235_residues
MEPIGYLESCFKDKFGTPRQPGLVKRAEARLKIRADLQPEESLQGLEGFSHVWLIWVFHQNKVARFHAKVHPPRLGGESM
GLFATRTPHRPNPIGLSLVELVRVEKDGIVVAGADLVDGTPILDIKPYLPEVEAIPTARTGWPAEIAKNPITVTFDDKAE
QLLQEWQVRNPDKALREVIEETLKQDPRPVVYRGFEEGDSPYRSSHAVRLYDVDVHFKFESPTQVRVFDILFMHN

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=135, Percent_Identity=54.0740740740741, Blast_Score=159, Evalue=2e-39,
Organism=Escherichia coli, GI1786393, Length=223, Percent_Identity=43.0493273542601, Blast_Score=171, Evalue=3e-44,
Organism=Drosophila melanogaster, GI24586408, Length=134, Percent_Identity=50.7462686567164, Blast_Score=138, Evalue=3e-33,
Organism=Drosophila melanogaster, GI45552503, Length=134, Percent_Identity=50.7462686567164, Blast_Score=138, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 26752; Mature: 26752

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIGYLESCFKDKFGTPRQPGLVKRAEARLKIRADLQPEESLQGLEGFSHVWLIWVFHQ
CCCHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCHHHHHHHHCCCCEEEEEEEEEC
NKVARFHAKVHPPRLGGESMGLFATRTPHRPNPIGLSLVELVRVEKDGIVVAGADLVDGT
CCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
PILDIKPYLPEVEAIPTARTGWPAEIAKNPITVTFDDKAEQLLQEWQVRNPDKALREVIE
CEEECCCCCCCCCCCCCCCCCCCHHHHCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHH
ETLKQDPRPVVYRGFEEGDSPYRSSHAVRLYDVDVHFKFESPTQVRVFDILFMHN
HHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEECC
>Mature Secondary Structure
MEPIGYLESCFKDKFGTPRQPGLVKRAEARLKIRADLQPEESLQGLEGFSHVWLIWVFHQ
CCCHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCHHHHHHHHCCCCEEEEEEEEEC
NKVARFHAKVHPPRLGGESMGLFATRTPHRPNPIGLSLVELVRVEKDGIVVAGADLVDGT
CCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
PILDIKPYLPEVEAIPTARTGWPAEIAKNPITVTFDDKAEQLLQEWQVRNPDKALREVIE
CEEECCCCCCCCCCCCCCCCCCCHHHHCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHH
ETLKQDPRPVVYRGFEEGDSPYRSSHAVRLYDVDVHFKFESPTQVRVFDILFMHN
HHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]