Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522002

Identifier: 42522002

GI number: 42522002

Start: 364754

End: 365671

Strand: Direct

Name: 42522002

Synonym: Bd0388

Alternate gene names: NA

Gene position: 364754-365671 (Clockwise)

Preceding gene: 42521996

Following gene: 42522011

Centisome position: 9.64

GC content: 49.35

Gene sequence:

>918_bases
ATGCTGATCCTGGCCCTGTATTGCTGTGAGTTGCGTGCAGAATACTCTGAAGCCGAGTCTGAATCCAAAGAGGGCAAGTG
GGAAAAATCCTTCATTGCCGGCAACATCGCCATTTCTGAATGGTTTGACGGTGTGGCGGAAGGGGTGGACCTGTTTCTGG
CCGGTCAGCAGTACACCACCAAACAGAATAAAACCGCTTTCCTGATTGAACCGTCTTTTTATTATAATGAAAAAGACGGT
TACACAGATGTCTTCAGTTTCAATTTTAATCTGCGTCTTCCCAACGTGGAAGAATACTGGCAGATCACTTTTACCAGCTA
TGATGAAACCAAAGAGCGGGGTATTTCCCAGACGTACCTGCGACAGACACCGCGTGAACGGGATTACGGCGCCACGCTGG
GGTTCTTCCGAAAACTGGGTGATGTTAAAGCGTCTTTCCAGCCACGCATCAGTTTTGCCGGATCTTTTTTGATCTCTCAC
ACACTCACCCTTGAAAGTGTCGTTGAACGGGGGAAAAACTATCGGGTGAATCCCAAGCTGCAATTTTATGCCGAGGCCGA
CAGGGGCACGGGAATCTTTCTGGCCTTCAACTTCGCCTTTCAGTTGTCTCAGCGTTTCAATCTGACTTTTGTGAACGAGG
GAGACTACGAGGACCGCGCGCATCTGTTCACGGTGACCAACGGTGTGGCGCTGGGGCACTGGTTTTCCAACCGGTCCAAC
ATGTCCTACAATATTTTTGTGACATCAACGAATCGGCCGAACTACCAGATGAAAAGCTACAACCTGGGCGTGGCCTGGAG
CCGTGTTCTGTACAAGAACATGCTCGACGTGCAAGTGATCCCGAATGTCGACTTTGCCGCCCAGTACGACTATGAGCAAA
ACCCGGGTATCACATTGAACTTCAATTTGAAGTTTTAA

Upstream 100 bases:

>100_bases
GCAAAGTATAAGTCTAAAATACTTCATGTCTGGAGACTAAAACGTGACGGGCAAAAAAGCACTAATATCTTTCGCGCGCA
AAAGTGCTCTGGGGTCAGTG

Downstream 100 bases:

>100_bases
AGAGCGCCTTCTTTCATCAGCAGATATTCTTTTACTTCCGGGCCCCAGTGATATTTCAGAAGATTGCTGCCTTTGCCAAT
CACCCGATGGCACGGGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLILALYCCELRAEYSEAESESKEGKWEKSFIAGNIAISEWFDGVAEGVDLFLAGQQYTTKQNKTAFLIEPSFYYNEKDG
YTDVFSFNFNLRLPNVEEYWQITFTSYDETKERGISQTYLRQTPRERDYGATLGFFRKLGDVKASFQPRISFAGSFLISH
TLTLESVVERGKNYRVNPKLQFYAEADRGTGIFLAFNFAFQLSQRFNLTFVNEGDYEDRAHLFTVTNGVALGHWFSNRSN
MSYNIFVTSTNRPNYQMKSYNLGVAWSRVLYKNMLDVQVIPNVDFAAQYDYEQNPGITLNFNLKF

Sequences:

>Translated_305_residues
MLILALYCCELRAEYSEAESESKEGKWEKSFIAGNIAISEWFDGVAEGVDLFLAGQQYTTKQNKTAFLIEPSFYYNEKDG
YTDVFSFNFNLRLPNVEEYWQITFTSYDETKERGISQTYLRQTPRERDYGATLGFFRKLGDVKASFQPRISFAGSFLISH
TLTLESVVERGKNYRVNPKLQFYAEADRGTGIFLAFNFAFQLSQRFNLTFVNEGDYEDRAHLFTVTNGVALGHWFSNRSN
MSYNIFVTSTNRPNYQMKSYNLGVAWSRVLYKNMLDVQVIPNVDFAAQYDYEQNPGITLNFNLKF
>Mature_305_residues
MLILALYCCELRAEYSEAESESKEGKWEKSFIAGNIAISEWFDGVAEGVDLFLAGQQYTTKQNKTAFLIEPSFYYNEKDG
YTDVFSFNFNLRLPNVEEYWQITFTSYDETKERGISQTYLRQTPRERDYGATLGFFRKLGDVKASFQPRISFAGSFLISH
TLTLESVVERGKNYRVNPKLQFYAEADRGTGIFLAFNFAFQLSQRFNLTFVNEGDYEDRAHLFTVTNGVALGHWFSNRSN
MSYNIFVTSTNRPNYQMKSYNLGVAWSRVLYKNMLDVQVIPNVDFAAQYDYEQNPGITLNFNLKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35345; Mature: 35345

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILALYCCELRAEYSEAESESKEGKWEKSFIAGNIAISEWFDGVAEGVDLFLAGQQYTT
CEEEEEEHHHHHHHHHHHHCCCCCCCCCHHEEECCEEHHHHHHHHHCCEEEEEECCCEEC
KQNKTAFLIEPSFYYNEKDGYTDVFSFNFNLRLPNVEEYWQITFTSYDETKERGISQTYL
CCCCEEEEECCCEEECCCCCCEEEEEEEEEEECCCHHHEEEEEEECCCCHHHCCCHHHHH
RQTPRERDYGATLGFFRKLGDVKASFQPRISFAGSFLISHTLTLESVVERGKNYRVNPKL
HCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEHHHHHHHHHHHHCCCCEEECCCE
QFYAEADRGTGIFLAFNFAFQLSQRFNLTFVNEGDYEDRAHLFTVTNGVALGHWFSNRSN
EEEEECCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCEEEEEEECCCCC
MSYNIFVTSTNRPNYQMKSYNLGVAWSRVLYKNMLDVQVIPNVDFAAQYDYEQNPGITLN
CEEEEEEEECCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCEEEE
FNLKF
EEEEC
>Mature Secondary Structure
MLILALYCCELRAEYSEAESESKEGKWEKSFIAGNIAISEWFDGVAEGVDLFLAGQQYTT
CEEEEEEHHHHHHHHHHHHCCCCCCCCCHHEEECCEEHHHHHHHHHCCEEEEEECCCEEC
KQNKTAFLIEPSFYYNEKDGYTDVFSFNFNLRLPNVEEYWQITFTSYDETKERGISQTYL
CCCCEEEEECCCEEECCCCCCEEEEEEEEEEECCCHHHEEEEEEECCCCHHHCCCHHHHH
RQTPRERDYGATLGFFRKLGDVKASFQPRISFAGSFLISHTLTLESVVERGKNYRVNPKL
HCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEHHHHHHHHHHHHCCCCEEECCCE
QFYAEADRGTGIFLAFNFAFQLSQRFNLTFVNEGDYEDRAHLFTVTNGVALGHWFSNRSN
EEEEECCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCEEEEEEECCCCC
MSYNIFVTSTNRPNYQMKSYNLGVAWSRVLYKNMLDVQVIPNVDFAAQYDYEQNPGITLN
CEEEEEEEECCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCEEEE
FNLKF
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA