| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is ybbP [H]
Identifier: 42521963
GI number: 42521963
Start: 324080
End: 326629
Strand: Direct
Name: ybbP [H]
Synonym: Bd0342
Alternate gene names: 42521963
Gene position: 324080-326629 (Clockwise)
Preceding gene: 42521962
Following gene: 42521964
Centisome position: 8.57
GC content: 51.84
Gene sequence:
>2550_bases ATGATTTTCCGACTTGCCTGCCGGGAGCTTCTGCGCAGCTGGCGCTTTGGGCTCTTTTTCATATTCAATTTAAGTCTTGG TCTGACGGGCTTTGTCTCGCTTCAGGCCTTCAATGTGGCCCTGGAAACAGAAATCAAAGCCAACGCCAAATCCATTCTTT CTGCGGATCTGGCCGTGGCTGCACGCCGCGAACTGACTGACGATGAAGCCAAGAAAATGCGGGAAGTGGTGCCGGCAGCT GCCACTGAAGGCAAGATCTATGAATTCTTTGCGATGTTAAGTTCGTCCAAGGGTTCAAGACTGGTTTTGGTCAAAGCCGT GGATCAGGCCTATCCGTTTTATGGGGAGCTGGATCTTGAATCCGGCCGCCAGATCACCGCGGGCAGTGATAATAAAGATA TTCTCTCCGCACCCAAGGCGTGGATCTATCCTGAGCTGAAATCCCAGCTGGGACTTGATGTCGGCGATGAGATTCAGCTG GGCCAGTTGAATTTGCAAATTTCGGATGTGGTGAAAAAAGACGCCACTCAGACCTTCCGCATGGCAAGCCTGGCGCCGAG AATCTTTGTGAACCGCGAGCTTTTGCCGCAGTCGGGTCTTTTGCAGTACGGAAGCACGTTCTCGCTGGCGCACTTGTTTA AGCTGCCAGAAACCACGGATCACAAGCTGGTGCGCGATCAGCTTTATAATGTTTTGACCGATCCACAGATCAATGTCGAA ACCCCTGAAACGGCGGGTGAAGATTCCGGGCGTCAGCTGGGTTATTTGTCAGACTATCTGGGCCTGGTTGCGATCGTGGC CCTGTTTATGTCAGCGCTGGGGGCGGCCTACATTTACCGTCTGTTCCTCTCCACGCGGATGAAAGAAATCGCTATCTTGC GCACCCTGGGTCTGCAAAGTGGCGAGGCGGTCAGCGTTTACATCCTGCAAGCCTCCATGCTGGGATTGCTAGCCACCATT CCGACCATGCTGTTTAGTTTGTTGGTGTTGCCTTTGCTCAGCAAACTGCTTGCGAACTTCACTCCGTTTGATTTAAGTCC GACGGTGACGCCGGAAGCGTTCCTGATTTGTCTGTTGATGGCGGTGTTTGGCAGCTTTGTGGTCAGCATCCCGTTCCTGA TGAAGATCTTTGATCTGCGTGCGGCGAAGCTGTTCAGTGAAGAAAAGTTTGCGGTGGGTGAAGGGCAGCGTCGTTATTGG ACGTTCCTGCCTTGTGTGGCTTTGTTCTATTTCCTTTCGGTGTATCAGGCACATTCCTGGAAGATCGGCAGTTTGTTTGT CGGTTCGATGGTGGCTGTGGTGCTGGCGCTGCTTTTGATCGGCTATGGCACTGTCAAAATGGCCGGCTGGATTCGGGGCT TGAACCGCTGGTTCCTGAAGTTCAGCTTCTTAAGCCTTTCCCGCCGGGCGGGGGCGAGTCTTGCGATCTTTGTGGCATTG GGCTTGGGGGCTTTGCTGATCAATATCCTGCCACAGCTGAAGAACTCGCTGCAGGCGGAATTCCAGCTGGATGCCAACAG CAAGATCCCGTCACTGTTTATGTTCGATATTCAGGATGAACAATGGACGGGTCTTGAAAAGATTCTGGCGGATCGTGAAG TGAAACCATTGGGCAGATCTCCGCTGGTGCGCGCGCGTATCCTGAAAGTGAACGATCAGGATTATGAAAGAAAGCTCGAC ACCCAGGGATTTAAAACCCGTGAAGAAGAACGTGAAGCCCGCTTCCGCAACCGCGGGATGAATCTGTCCTTCCGTGAAGG TCTTTCTGATTCCGAAATCATGATTGATGGCCGGCCGTTCTCAGGTCCTTTTGATCCGGAAAAACAAAAGCGAGCCGAGC TGTCGGTGGAAACCCGCTTTGCCGACCGCATGGGCTTTAAGATCGGTGATGTGCTGGTCTTTGACGTTCAGGGTGTGGAA GTGGAAGGCGAAATCATCAACCTGCGCAAGGTGAAGTGGACAAGCTTCCAGCCGAATTTCTTTATTATGGTGCAAAACGG TGTTTTGAACGAAGCCCCGAAAAGCTGGATCGCGGCGATTCCGTTCCTGCCAGAACAGCAAAGATCTGAACTGCAAAATG CCATCGCCAAAGAATTTTCCAACGTGTCCGTTATTGATGTTGTGCGCACGGTGGATGATGTCCTGAAGACCGCCGAAAAA ATGAGCTGGTCCCTGGAACTCATGGCGGGTCTGGCGCTATTGACCGGATACATCGTATTGTTCTCGATTGTGCGCAGTCA GATCAAGCTGCGCCGTTGGGAGCTGAACATGCTAAAAATCCTCGGCGCCAGCTGGGGAGAGGTCGCAAGCTTCATTCTGA CCGAATTTGCATTTCTTGCATTTATTGCCTCGTTCTTTGGGGCGGCTTTGAGTGTGGTGGTGAGTTTTGCTCTGAATACA TTCATCTTTGAAAGCGACTTTAAGTTGTCATTGATTCAGCCGCTTTTGTCGGTGGTGATTATCACGACTTTAAGTCTGGT GATTTCATTCCTGGCCAGTCTGGATATCGTGCGTGAAAGCGCCCTGAGCATCCTGCGGGAAGAAAAATAG
Upstream 100 bases:
>100_bases AACACAAGATCACCACGTTGCTGGTGACTCACAGTGAAGCTCTGGCGAAAAAATGTGAACGTACTTTGCGCCTTGATGAA GGCCAGTTGAAGGAAGCGTA
Downstream 100 bases:
>100_bases ACGGGAAACCTTTCAATCCCGTCTGCTTTGATGTACAAAAGTATCCATGATGTCGCCAAACGAGGCCTTGGCCAAAGCCA AAATCATACTTGAAGAAGGG
Product: ABC-type transport system, permease component.
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MIFRLACRELLRSWRFGLFFIFNLSLGLTGFVSLQAFNVALETEIKANAKSILSADLAVAARRELTDDEAKKMREVVPAA ATEGKIYEFFAMLSSSKGSRLVLVKAVDQAYPFYGELDLESGRQITAGSDNKDILSAPKAWIYPELKSQLGLDVGDEIQL GQLNLQISDVVKKDATQTFRMASLAPRIFVNRELLPQSGLLQYGSTFSLAHLFKLPETTDHKLVRDQLYNVLTDPQINVE TPETAGEDSGRQLGYLSDYLGLVAIVALFMSALGAAYIYRLFLSTRMKEIAILRTLGLQSGEAVSVYILQASMLGLLATI PTMLFSLLVLPLLSKLLANFTPFDLSPTVTPEAFLICLLMAVFGSFVVSIPFLMKIFDLRAAKLFSEEKFAVGEGQRRYW TFLPCVALFYFLSVYQAHSWKIGSLFVGSMVAVVLALLLIGYGTVKMAGWIRGLNRWFLKFSFLSLSRRAGASLAIFVAL GLGALLINILPQLKNSLQAEFQLDANSKIPSLFMFDIQDEQWTGLEKILADREVKPLGRSPLVRARILKVNDQDYERKLD TQGFKTREEEREARFRNRGMNLSFREGLSDSEIMIDGRPFSGPFDPEKQKRAELSVETRFADRMGFKIGDVLVFDVQGVE VEGEIINLRKVKWTSFQPNFFIMVQNGVLNEAPKSWIAAIPFLPEQQRSELQNAIAKEFSNVSVIDVVRTVDDVLKTAEK MSWSLELMAGLALLTGYIVLFSIVRSQIKLRRWELNMLKILGASWGEVASFILTEFAFLAFIASFFGAALSVVVSFALNT FIFESDFKLSLIQPLLSVVIITTLSLVISFLASLDIVRESALSILREEK
Sequences:
>Translated_849_residues MIFRLACRELLRSWRFGLFFIFNLSLGLTGFVSLQAFNVALETEIKANAKSILSADLAVAARRELTDDEAKKMREVVPAA ATEGKIYEFFAMLSSSKGSRLVLVKAVDQAYPFYGELDLESGRQITAGSDNKDILSAPKAWIYPELKSQLGLDVGDEIQL GQLNLQISDVVKKDATQTFRMASLAPRIFVNRELLPQSGLLQYGSTFSLAHLFKLPETTDHKLVRDQLYNVLTDPQINVE TPETAGEDSGRQLGYLSDYLGLVAIVALFMSALGAAYIYRLFLSTRMKEIAILRTLGLQSGEAVSVYILQASMLGLLATI PTMLFSLLVLPLLSKLLANFTPFDLSPTVTPEAFLICLLMAVFGSFVVSIPFLMKIFDLRAAKLFSEEKFAVGEGQRRYW TFLPCVALFYFLSVYQAHSWKIGSLFVGSMVAVVLALLLIGYGTVKMAGWIRGLNRWFLKFSFLSLSRRAGASLAIFVAL GLGALLINILPQLKNSLQAEFQLDANSKIPSLFMFDIQDEQWTGLEKILADREVKPLGRSPLVRARILKVNDQDYERKLD TQGFKTREEEREARFRNRGMNLSFREGLSDSEIMIDGRPFSGPFDPEKQKRAELSVETRFADRMGFKIGDVLVFDVQGVE VEGEIINLRKVKWTSFQPNFFIMVQNGVLNEAPKSWIAAIPFLPEQQRSELQNAIAKEFSNVSVIDVVRTVDDVLKTAEK MSWSLELMAGLALLTGYIVLFSIVRSQIKLRRWELNMLKILGASWGEVASFILTEFAFLAFIASFFGAALSVVVSFALNT FIFESDFKLSLIQPLLSVVIITTLSLVISFLASLDIVRESALSILREEK >Mature_849_residues MIFRLACRELLRSWRFGLFFIFNLSLGLTGFVSLQAFNVALETEIKANAKSILSADLAVAARRELTDDEAKKMREVVPAA ATEGKIYEFFAMLSSSKGSRLVLVKAVDQAYPFYGELDLESGRQITAGSDNKDILSAPKAWIYPELKSQLGLDVGDEIQL GQLNLQISDVVKKDATQTFRMASLAPRIFVNRELLPQSGLLQYGSTFSLAHLFKLPETTDHKLVRDQLYNVLTDPQINVE TPETAGEDSGRQLGYLSDYLGLVAIVALFMSALGAAYIYRLFLSTRMKEIAILRTLGLQSGEAVSVYILQASMLGLLATI PTMLFSLLVLPLLSKLLANFTPFDLSPTVTPEAFLICLLMAVFGSFVVSIPFLMKIFDLRAAKLFSEEKFAVGEGQRRYW TFLPCVALFYFLSVYQAHSWKIGSLFVGSMVAVVLALLLIGYGTVKMAGWIRGLNRWFLKFSFLSLSRRAGASLAIFVAL GLGALLINILPQLKNSLQAEFQLDANSKIPSLFMFDIQDEQWTGLEKILADREVKPLGRSPLVRARILKVNDQDYERKLD TQGFKTREEEREARFRNRGMNLSFREGLSDSEIMIDGRPFSGPFDPEKQKRAELSVETRFADRMGFKIGDVLVFDVQGVE VEGEIINLRKVKWTSFQPNFFIMVQNGVLNEAPKSWIAAIPFLPEQQRSELQNAIAKEFSNVSVIDVVRTVDDVLKTAEK MSWSLELMAGLALLTGYIVLFSIVRSQIKLRRWELNMLKILGASWGEVASFILTEFAFLAFIASFFGAALSVVVSFALNT FIFESDFKLSLIQPLLSVVIITTLSLVISFLASLDIVRESALSILREEK
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=849, Percent_Identity=25.7950530035336, Blast_Score=167, Evalue=4e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 94955; Mature: 94955
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFRLACRELLRSWRFGLFFIFNLSLGLTGFVSLQAFNVALETEIKANAKSILSADLAVA CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHH ARRELTDDEAKKMREVVPAAATEGKIYEFFAMLSSSKGSRLVLVKAVDQAYPFYGELDLE HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCEEECC SGRQITAGSDNKDILSAPKAWIYPELKSQLGLDVGDEIQLGQLNLQISDVVKKDATQTFR CCCEEECCCCCCHHHHCCCHHCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH MASLAPRIFVNRELLPQSGLLQYGSTFSLAHLFKLPETTDHKLVRDQLYNVLTDPQINVE HHHHCCHHHCCHHHCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC TPETAGEDSGRQLGYLSDYLGLVAIVALFMSALGAAYIYRLFLSTRMKEIAILRTLGLQS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GEAVSVYILQASMLGLLATIPTMLFSLLVLPLLSKLLANFTPFDLSPTVTPEAFLICLLM CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH AVFGSFVVSIPFLMKIFDLRAAKLFSEEKFAVGEGQRRYWTFLPCVALFYFLSVYQAHSW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KIGSLFVGSMVAVVLALLLIGYGTVKMAGWIRGLNRWFLKFSFLSLSRRAGASLAIFVAL CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH GLGALLINILPQLKNSLQAEFQLDANSKIPSLFMFDIQDEQWTGLEKILADREVKPLGRS HHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCC PLVRARILKVNDQDYERKLDTQGFKTREEEREARFRNRGMNLSFREGLSDSEIMIDGRPF CCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCC SGPFDPEKQKRAELSVETRFADRMGFKIGDVLVFDVQGVEVEGEIINLRKVKWTSFQPNF CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEEECCEEEEEEEEEEECCCCCE FIMVQNGVLNEAPKSWIAAIPFLPEQQRSELQNAIAKEFSNVSVIDVVRTVDDVLKTAEK EEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH MSWSLELMAGLALLTGYIVLFSIVRSQIKLRRWELNMLKILGASWGEVASFILTEFAFLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH FIASFFGAALSVVVSFALNTFIFESDFKLSLIQPLLSVVIITTLSLVISFLASLDIVRES HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSILREEK HHHHHHCCC >Mature Secondary Structure MIFRLACRELLRSWRFGLFFIFNLSLGLTGFVSLQAFNVALETEIKANAKSILSADLAVA CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHH ARRELTDDEAKKMREVVPAAATEGKIYEFFAMLSSSKGSRLVLVKAVDQAYPFYGELDLE HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCEEECC SGRQITAGSDNKDILSAPKAWIYPELKSQLGLDVGDEIQLGQLNLQISDVVKKDATQTFR CCCEEECCCCCCHHHHCCCHHCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH MASLAPRIFVNRELLPQSGLLQYGSTFSLAHLFKLPETTDHKLVRDQLYNVLTDPQINVE HHHHCCHHHCCHHHCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC TPETAGEDSGRQLGYLSDYLGLVAIVALFMSALGAAYIYRLFLSTRMKEIAILRTLGLQS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GEAVSVYILQASMLGLLATIPTMLFSLLVLPLLSKLLANFTPFDLSPTVTPEAFLICLLM CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH AVFGSFVVSIPFLMKIFDLRAAKLFSEEKFAVGEGQRRYWTFLPCVALFYFLSVYQAHSW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KIGSLFVGSMVAVVLALLLIGYGTVKMAGWIRGLNRWFLKFSFLSLSRRAGASLAIFVAL CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH GLGALLINILPQLKNSLQAEFQLDANSKIPSLFMFDIQDEQWTGLEKILADREVKPLGRS HHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCC PLVRARILKVNDQDYERKLDTQGFKTREEEREARFRNRGMNLSFREGLSDSEIMIDGRPF CCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCC SGPFDPEKQKRAELSVETRFADRMGFKIGDVLVFDVQGVEVEGEIINLRKVKWTSFQPNF CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEEECCEEEEEEEEEEECCCCCE FIMVQNGVLNEAPKSWIAAIPFLPEQQRSELQNAIAKEFSNVSVIDVVRTVDDVLKTAEK EEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH MSWSLELMAGLALLTGYIVLFSIVRSQIKLRRWELNMLKILGASWGEVASFILTEFAFLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH FIASFFGAALSVVVSFALNTFIFESDFKLSLIQPLLSVVIITTLSLVISFLASLDIVRES HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSILREEK HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]