Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is rbp [H]

Identifier: 42521960

GI number: 42521960

Start: 322390

End: 322752

Strand: Direct

Name: rbp [H]

Synonym: Bd0339

Alternate gene names: 42521960

Gene position: 322390-322752 (Clockwise)

Preceding gene: 42521959

Following gene: 42521961

Centisome position: 8.52

GC content: 56.47

Gene sequence:

>363_bases
GTGGCTAAGAAACTTTACGTAGGCAACTTGCCTTACTCTGTAGACGATGAGGCACTTCATCAACACTTCGCACAGTTCGG
TGCGGTAGATTCAGCAAAAGTGATCATGGATAGAGAAACCGGTCGCTCTAAAGGCTTCGGCTTTGTAGAGATGTCCGATG
ACTCTGCTGCTGATCAAGCTATCGAAAGAGGCAACGGTATTGAGTTGGGCGGTCGTCCTATCAATATCTCTGAGGCTCGT
CCTCAGGCTCCTCGTGAAGGCGGCCCACGTCGTGGTGGTGGCGGCTTCGGTGGTGGTCGCGGCGGTGGCGGCGGCGAAAG
ACGTGGTGGCTTCGGCGGCGGTGGTCGCGGTGGTCCTCGCTAA

Upstream 100 bases:

>100_bases
CTAGCGTTATTGGTAGTTAAAAGTCCCCGTGTGAGTGTACTCGATTTCATCTTGTTCGAAGGCTTCCTCGGGTATTATGG
CCCAACCATAGGAGGTCTTT

Downstream 100 bases:

>100_bases
GCAGCCCATACTTTGACGAAGCTGGACTTGTCATTGTCTTAAAAACTAAGGTCTCATAGGAACCCTATGAGACCTTTTTT
ATTTTCACTCATTCTTCTTT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MAKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIERGNGIELGGRPINISEAR
PQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR

Sequences:

>Translated_120_residues
MAKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIERGNGIELGGRPINISEAR
PQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR
>Mature_119_residues
AKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIERGNGIELGGRPINISEARP
QAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4757926, Length=73, Percent_Identity=45.2054794520548, Blast_Score=77, Evalue=4e-15,
Organism=Homo sapiens, GI35493811, Length=73, Percent_Identity=45.2054794520548, Blast_Score=77, Evalue=4e-15,
Organism=Homo sapiens, GI116734694, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI116734696, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI116734698, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI221139802, Length=77, Percent_Identity=44.1558441558442, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI34577105, Length=76, Percent_Identity=44.7368421052632, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI34577107, Length=77, Percent_Identity=44.1558441558442, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=42.1052631578947, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI289547743, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI289547741, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI70780381, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI303305009, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI5174637, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI14149675, Length=77, Percent_Identity=38.961038961039, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI45439316, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI208431833, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI4504715, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI4557493, Length=77, Percent_Identity=38.961038961039, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI208431836, Length=76, Percent_Identity=43.421052631579, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI24762232, Length=80, Percent_Identity=38.75, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI46367787, Length=83, Percent_Identity=42.1686746987952, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI4502847, Length=76, Percent_Identity=38.1578947368421, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI212648574, Length=79, Percent_Identity=44.3037974683544, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569937, Length=79, Percent_Identity=44.3037974683544, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=38.6666666666667, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=41.3333333333333, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=77, Percent_Identity=37.6623376623377, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=40.2597402597403, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567131, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567133, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=43.0379746835443, Blast_Score=70, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321013, Length=76, Percent_Identity=46.0526315789474, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17137710, Length=77, Percent_Identity=41.5584415584416, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=42.4657534246575, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=42.4657534246575, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24582417, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550943, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582419, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582423, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582421, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12332; Mature: 12201

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MAKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQA
CCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHH
IERGNGIELGGRPINISEARPQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR
HHCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQA
CCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHH
IERGNGIELGGRPINISEARPQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR
HHCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]