Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is rbp [H]

Identifier: 42521942

GI number: 42521942

Start: 305665

End: 305979

Strand: Direct

Name: rbp [H]

Synonym: Bd0320

Alternate gene names: 42521942

Gene position: 305665-305979 (Clockwise)

Preceding gene: 42521938

Following gene: 42521943

Centisome position: 8.08

GC content: 48.57

Gene sequence:

>315_bases
ATGGGAAAAAAAATATACGTCGGTAATCTTTCATACAATGTGGATCAGGATCAGCTTGGTGGCTTGTTTGCTGATTTCGG
CACTGTTGATTCCGTAAACATCATCACAGACCGTGACACTGGTCGCAGCAAAGGTTTCGCATTTGTTGAAATGTCTTCGG
ACTCTGAAGCAACTGCTGCGATTGACAAGCTGAATGGCATGGATCTTGGTGGTCGTGCGATGAATATCTCTGAAGCTAAA
CCACAAGAGCCGCGCTCTGGTGGCGGTCCACGTCGCAATGGCGGTGGATTCGGCGGATCTCGTCGTTCTTACTAG

Upstream 100 bases:

>100_bases
TGGGCGCTGTGTTCTACTGAAGTCACTTAGTCGTTCACATACTTCATCAGATGTCCTTTTGTCTTCTGCGAATGGCCCCT
AGCTTTCTAAGGAGGCAAAT

Downstream 100 bases:

>100_bases
TATTATCATAGGCAGTCGGCCGGTACTTTAAAATACCGGCCTTTTCATTTCTAAACAGGGAGGCCTATGGCTAAGGACGA
TTTAGTAAGTATTGATGGGA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MGKKIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDKLNGMDLGGRAMNISEAK
PQEPRSGGGPRRNGGGFGGSRRSY

Sequences:

>Translated_104_residues
MGKKIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDKLNGMDLGGRAMNISEAK
PQEPRSGGGPRRNGGGFGGSRRSY
>Mature_103_residues
GKKIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDKLNGMDLGGRAMNISEAKP
QEPRSGGGPRRNGGGFGGSRRSY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI116734696, Length=73, Percent_Identity=42.4657534246575, Blast_Score=77, Evalue=4e-15,
Organism=Homo sapiens, GI116734694, Length=73, Percent_Identity=42.4657534246575, Blast_Score=77, Evalue=4e-15,
Organism=Homo sapiens, GI4757926, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=5e-15,
Organism=Homo sapiens, GI35493811, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=5e-15,
Organism=Homo sapiens, GI116734698, Length=73, Percent_Identity=42.4657534246575, Blast_Score=76, Evalue=6e-15,
Organism=Homo sapiens, GI14149675, Length=77, Percent_Identity=35.0649350649351, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI4557493, Length=77, Percent_Identity=35.0649350649351, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI221316765, Length=76, Percent_Identity=44.7368421052632, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI221316773, Length=76, Percent_Identity=44.7368421052632, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI221316767, Length=76, Percent_Identity=44.7368421052632, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI221316769, Length=76, Percent_Identity=44.7368421052632, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI221316771, Length=76, Percent_Identity=44.7368421052632, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI303305009, Length=83, Percent_Identity=38.5542168674699, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI45439316, Length=83, Percent_Identity=38.5542168674699, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI5174637, Length=83, Percent_Identity=38.5542168674699, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=35.5263157894737, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=43.0379746835443, Blast_Score=78, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=42.3076923076923, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=36, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=37.6623376623377, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25141353, Length=82, Percent_Identity=39.0243902439024, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510027, Length=82, Percent_Identity=39.0243902439024, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17532167, Length=72, Percent_Identity=37.5, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17510025, Length=82, Percent_Identity=39.0243902439024, Blast_Score=62, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324312, Length=75, Percent_Identity=38.6666666666667, Blast_Score=60, Evalue=8e-11,
Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24582417, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI45550943, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24582419, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24582423, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24582421, Length=73, Percent_Identity=41.0958904109589, Blast_Score=76, Evalue=4e-15,
Organism=Drosophila melanogaster, GI161077787, Length=76, Percent_Identity=43.421052631579, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI18860091, Length=76, Percent_Identity=43.421052631579, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221330652, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI62471589, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549692, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549690, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221330653, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549688, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19549694, Length=76, Percent_Identity=42.1052631578947, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=32.5301204819277, Blast_Score=65, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24654797, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45552715, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654810, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654800, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654793, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654807, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136378, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654804, Length=87, Percent_Identity=37.9310344827586, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10998; Mature: 10867

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MGKKIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAA
CCCEEEECCCCCCCCHHHHCCEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHH
IDKLNGMDLGGRAMNISEAKPQEPRSGGGPRRNGGGFGGSRRSY
HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GKKIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAA
CCEEEECCCCCCCCHHHHCCEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHH
IDKLNGMDLGGRAMNISEAKPQEPRSGGGPRRNGGGFGGSRRSY
HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]