Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is 42521851

Identifier: 42521851

GI number: 42521851

Start: 210867

End: 212750

Strand: Direct

Name: 42521851

Synonym: Bd0225

Alternate gene names: NA

Gene position: 210867-212750 (Clockwise)

Preceding gene: 42521850

Following gene: 42521853

Centisome position: 5.57

GC content: 50.53

Gene sequence:

>1884_bases
ATGTTTCCATACACTAGGACCGCAATCATCGTTCCTTTCCTGATGACCCTCACGGCTTGCGCGACCTTCACGTCAAATGA
GTCTGACGACAAAGCCCCTTACTACGAGGCATCATTCAACGATAGAAATCGCGCTCCTGCTTCCTTTGCTCCGGCGGTGG
TCTCTCCGGAAGACAACGGTGCGGCCTCTTTGGATCCACTCTACATGCGCACTCAGGCGGATTATTACTTCGCGATGGGT
GAGGCTTACGCTCTGGAAGGCAACTCCCAGAAAGCGGTGGAAGCTTTCAAAATGGTTCTTATTTACGATACCAATTCCCC
GGCCGTGAACATGCGTCTGGCGGCAGAATTTCTGAAGCAGGGCATGATCACCGAATCTTTGGCGCAGGCTGAAGAAGCGG
TGGCGAAAGACCCTAAGAACGTCGATAGCCACTTGTTGCTGGGTGGTTTGTATTCCTCCCTGAAGCTTTATCCAAAAGCG
ATGGAACAATACAACACCGTGATGAAGCTGCAGCCAGACAACACCGAAGCGCCCCTTTACATTGGTGCTTTGTACTCGGA
ACAGAAACAGTCTGACAAAGCGGTGAAGTACTTTGAGTCCCTGCTGAAAAACCCTGAATACAACACTCCGTACCTGGCTC
ACTACTATATCGGACGCGTGCGTCTGGAGCAGCCTGAAGCCAAATACCAAAAAGCGGCAGAAGCTTCCTTCAAGAAAGCT
CTGGAGCTGAAGCCGGATTTCGCGGATGCGGTTCTGACTTTGGGTGTTCTTTATTCCAAGCAGAAAACGGAAGACAAAGC
CGTGTCCTTGTACCGTGCTTTCCAGAAGGAAAACTCTCCAAGCCCACGTGTGGCGGAAGTCCTGGCGCAGATCTATATCG
AGCGCGGTGATTATGAAAATGCGTATGAGCAGCTGGAAGTGATGGAAAATGATTCCGACGAGCCGCTGAATGTTCGCATG
AAGATGGCTTTGATCCTGATTGAACAGAAACGTTACGACACTGCGGTGGCAAAACTGGAAGAGATCCTGAAAGATGCTCC
AGAGTCTGACAAAGTTCGTTTCTATCTGGCCGCGGTTTATGAAGAAACCCGCCAGCATGAAAAAGCCGTGAAAGAGTACA
CGAAGATCCCTTCCACCAGCACTTACTATGGTGAAGCCGTGGTTCACGCTGCTTACCTGCTAAAAGGGTTGGGCCGTTTG
AATGAAGGTTTGGAAGTGGCGGCCGCTGGTTTGAAAGCACGCCAGGATCAGCCTCAGATCTTTGCGATGTATGCTTCCTT
GCTGGATGAAAAGGGCGACTATAAAAATGCCTCTGCGACATTGGAGCAGGGTCTGAAAAAGTTCCCGGAAAATGCTCAGC
TTCGTTTCTATTACGGTACGATCAACGACCGTATGGGCAACAAAGATGTGGTCGTAACAGAAATGCAAAAGGTGCTGGAG
TTGGATCCAAACCATGTGCAGGGCCTGAACTATCTGGCTTTCACCTGGGCTGAAATGGGCGTGAAACTGCCGGAAGCCGA
AAAGCTGGCGCGTCGTGCGCTGGAGCTTGAGCCGACGGATGGTTATGTTCTGGATACTCTGGGCTGGATCTTGTACAAAC
AAAACAAGTTCGCTGAATCCATCAAGTTCCTGGAGGCCGCTTACAAACATCAGTCCACGGTGAGCATCATTGCTGAGCAC
CTGGGTGATGCATACTACAAGCATTCCATGGTGGATAAAGCCAAGAAGATGTACAAGAAAGCCGCGGATCTGGAAACCGA
ACCTAAAAAGGTTCAGGAAATCCGCAGCAAAATCACGGCGATTGAAAAGCAGGAGCTGAACGGCACACCTCGTCTGCCAG
CTTCCGTTGAAAAGCCGGTGGCAGAACACGCTTCTGAAAAATAG

Upstream 100 bases:

>100_bases
TTCTCATCCGCGTCCTTGGTCGCGTTTCCTCAATGGGCGCTTAAGCCGCATCAAGCAATTCTCATAAGAAGCCGATCAGC
CTAGTGACTAAGGAGATTTC

Downstream 100 bases:

>100_bases
ATTTGAAATTTACAATTAAAACTAAAAAGCCCGCGCACTGCGGGCTTTTTCTTTTTAAGCTTAGGAAGCTGGTTCGGTTC
TCTTTTCCTGAAGCAGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 627; Mature: 627

Protein sequence:

>627_residues
MFPYTRTAIIVPFLMTLTACATFTSNESDDKAPYYEASFNDRNRAPASFAPAVVSPEDNGAASLDPLYMRTQADYYFAMG
EAYALEGNSQKAVEAFKMVLIYDTNSPAVNMRLAAEFLKQGMITESLAQAEEAVAKDPKNVDSHLLLGGLYSSLKLYPKA
MEQYNTVMKLQPDNTEAPLYIGALYSEQKQSDKAVKYFESLLKNPEYNTPYLAHYYIGRVRLEQPEAKYQKAAEASFKKA
LELKPDFADAVLTLGVLYSKQKTEDKAVSLYRAFQKENSPSPRVAEVLAQIYIERGDYENAYEQLEVMENDSDEPLNVRM
KMALILIEQKRYDTAVAKLEEILKDAPESDKVRFYLAAVYEETRQHEKAVKEYTKIPSTSTYYGEAVVHAAYLLKGLGRL
NEGLEVAAAGLKARQDQPQIFAMYASLLDEKGDYKNASATLEQGLKKFPENAQLRFYYGTINDRMGNKDVVVTEMQKVLE
LDPNHVQGLNYLAFTWAEMGVKLPEAEKLARRALELEPTDGYVLDTLGWILYKQNKFAESIKFLEAAYKHQSTVSIIAEH
LGDAYYKHSMVDKAKKMYKKAADLETEPKKVQEIRSKITAIEKQELNGTPRLPASVEKPVAEHASEK

Sequences:

>Translated_627_residues
MFPYTRTAIIVPFLMTLTACATFTSNESDDKAPYYEASFNDRNRAPASFAPAVVSPEDNGAASLDPLYMRTQADYYFAMG
EAYALEGNSQKAVEAFKMVLIYDTNSPAVNMRLAAEFLKQGMITESLAQAEEAVAKDPKNVDSHLLLGGLYSSLKLYPKA
MEQYNTVMKLQPDNTEAPLYIGALYSEQKQSDKAVKYFESLLKNPEYNTPYLAHYYIGRVRLEQPEAKYQKAAEASFKKA
LELKPDFADAVLTLGVLYSKQKTEDKAVSLYRAFQKENSPSPRVAEVLAQIYIERGDYENAYEQLEVMENDSDEPLNVRM
KMALILIEQKRYDTAVAKLEEILKDAPESDKVRFYLAAVYEETRQHEKAVKEYTKIPSTSTYYGEAVVHAAYLLKGLGRL
NEGLEVAAAGLKARQDQPQIFAMYASLLDEKGDYKNASATLEQGLKKFPENAQLRFYYGTINDRMGNKDVVVTEMQKVLE
LDPNHVQGLNYLAFTWAEMGVKLPEAEKLARRALELEPTDGYVLDTLGWILYKQNKFAESIKFLEAAYKHQSTVSIIAEH
LGDAYYKHSMVDKAKKMYKKAADLETEPKKVQEIRSKITAIEKQELNGTPRLPASVEKPVAEHASEK
>Mature_627_residues
MFPYTRTAIIVPFLMTLTACATFTSNESDDKAPYYEASFNDRNRAPASFAPAVVSPEDNGAASLDPLYMRTQADYYFAMG
EAYALEGNSQKAVEAFKMVLIYDTNSPAVNMRLAAEFLKQGMITESLAQAEEAVAKDPKNVDSHLLLGGLYSSLKLYPKA
MEQYNTVMKLQPDNTEAPLYIGALYSEQKQSDKAVKYFESLLKNPEYNTPYLAHYYIGRVRLEQPEAKYQKAAEASFKKA
LELKPDFADAVLTLGVLYSKQKTEDKAVSLYRAFQKENSPSPRVAEVLAQIYIERGDYENAYEQLEVMENDSDEPLNVRM
KMALILIEQKRYDTAVAKLEEILKDAPESDKVRFYLAAVYEETRQHEKAVKEYTKIPSTSTYYGEAVVHAAYLLKGLGRL
NEGLEVAAAGLKARQDQPQIFAMYASLLDEKGDYKNASATLEQGLKKFPENAQLRFYYGTINDRMGNKDVVVTEMQKVLE
LDPNHVQGLNYLAFTWAEMGVKLPEAEKLARRALELEPTDGYVLDTLGWILYKQNKFAESIKFLEAAYKHQSTVSIIAEH
LGDAYYKHSMVDKAKKMYKKAADLETEPKKVQEIRSKITAIEKQELNGTPRLPASVEKPVAEHASEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011717
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR013105
- InterPro:   IPR019734 [H]

Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]

EC number: NA

Molecular weight: Translated: 70772; Mature: 70772

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPYTRTAIIVPFLMTLTACATFTSNESDDKAPYYEASFNDRNRAPASFAPAVVSPEDNG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCCCC
AASLDPLYMRTQADYYFAMGEAYALEGNSQKAVEAFKMVLIYDTNSPAVNMRLAAEFLKQ
CCCCCCHHEEECCCEEEEECCEEEECCCCHHHHHHEEEEEEEECCCCCCHHHHHHHHHHC
GMITESLAQAEEAVAKDPKNVDSHLLLGGLYSSLKLYPKAMEQYNTVMKLQPDNTEAPLY
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEE
IGALYSEQKQSDKAVKYFESLLKNPEYNTPYLAHYYIGRVRLEQPEAKYQKAAEASFKKA
EEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEECCCHHHHHHHHHHHHHHH
LELKPDFADAVLTLGVLYSKQKTEDKAVSLYRAFQKENSPSPRVAEVLAQIYIERGDYEN
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
AYEQLEVMENDSDEPLNVRMKMALILIEQKRYDTAVAKLEEILKDAPESDKVRFYLAAVY
HHHHHHHHCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
EETRQHEKAVKEYTKIPSTSTYYGEAVVHAAYLLKGLGRLNEGLEVAAAGLKARQDQPQI
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
FAMYASLLDEKGDYKNASATLEQGLKKFPENAQLRFYYGTINDRMGNKDVVVTEMQKVLE
HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
LDPNHVQGLNYLAFTWAEMGVKLPEAEKLARRALELEPTDGYVLDTLGWILYKQNKFAES
CCCCHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHH
IKFLEAAYKHQSTVSIIAEHLGDAYYKHSMVDKAKKMYKKAADLETEPKKVQEIRSKITA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IEKQELNGTPRLPASVEKPVAEHASEK
HHHHHCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MFPYTRTAIIVPFLMTLTACATFTSNESDDKAPYYEASFNDRNRAPASFAPAVVSPEDNG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCCCC
AASLDPLYMRTQADYYFAMGEAYALEGNSQKAVEAFKMVLIYDTNSPAVNMRLAAEFLKQ
CCCCCCHHEEECCCEEEEECCEEEECCCCHHHHHHEEEEEEEECCCCCCHHHHHHHHHHC
GMITESLAQAEEAVAKDPKNVDSHLLLGGLYSSLKLYPKAMEQYNTVMKLQPDNTEAPLY
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEE
IGALYSEQKQSDKAVKYFESLLKNPEYNTPYLAHYYIGRVRLEQPEAKYQKAAEASFKKA
EEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEECCCHHHHHHHHHHHHHHH
LELKPDFADAVLTLGVLYSKQKTEDKAVSLYRAFQKENSPSPRVAEVLAQIYIERGDYEN
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
AYEQLEVMENDSDEPLNVRMKMALILIEQKRYDTAVAKLEEILKDAPESDKVRFYLAAVY
HHHHHHHHCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
EETRQHEKAVKEYTKIPSTSTYYGEAVVHAAYLLKGLGRLNEGLEVAAAGLKARQDQPQI
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
FAMYASLLDEKGDYKNASATLEQGLKKFPENAQLRFYYGTINDRMGNKDVVVTEMQKVLE
HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
LDPNHVQGLNYLAFTWAEMGVKLPEAEKLARRALELEPTDGYVLDTLGWILYKQNKFAES
CCCCHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHH
IKFLEAAYKHQSTVSIIAEHLGDAYYKHSMVDKAKKMYKKAADLETEPKKVQEIRSKITA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IEKQELNGTPRLPASVEKPVAEHASEK
HHHHHCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7883699; 10984043 [H]