| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521850
Identifier: 42521850
GI number: 42521850
Start: 210192
End: 210761
Strand: Direct
Name: 42521850
Synonym: Bd0224
Alternate gene names: NA
Gene position: 210192-210761 (Clockwise)
Preceding gene: 42521848
Following gene: 42521851
Centisome position: 5.56
GC content: 50.35
Gene sequence:
>570_bases TTGTCTAAAGTTTTTTCCAAAGCCCGCCGAAATGTTAAGGAACGACCTTCAATCTTTGGCGGAAAATTAATGAAAAACGA GCAAAAACAAGAGTTTAAGTCCTCTGGTGTCTTGGCCCTGCTGGGCCTTGTAGGATTCTCTACAGCCATCATTGCGACGC CTTGGAATCGCCAGATTCAGGACTCTAAAAGTGAGACAGCTCGCCAAAAAGCAGAGGTCGTAGGCTACCAAGTTGTACAA ATTTACCGCGAGGCATCAAAAAATACAGTGTCGGAAGACAAGGCCGGAGGCAGGCTGCCAGCTTCGGTTTCAGAGGATAA GTCCTCTTTGACTGCTGAAAACCTGCGCAGCACAGGCACCATGGGGACCGATCCCTGGGGGCAGCCGTACCGTTATCGCA TTTTGTCCGGGGCAGATACCACTGGAAAGATCAAAATCCTGGTGTGGTCGTCCGGTCCAAACCAGAAAGTCGAAACGGCG TCCCTCGACGACGAGGGCAAATCCCTGGACTCTCAGCCTCTTTATGAAGGGGATGATTTGGGAGTCCTTCTGAGTGTGTC TCATAACTAG
Upstream 100 bases:
>100_bases GCCGCCACCCCTTGTCAAGGGGTCCTAAAATCAAAAGAAAAGACTCTAGGCGTCATTTATTCTGCAAATAGCCATTCGTT TTTTCGAATTTTACAGACCT
Downstream 100 bases:
>100_bases GCACTTTCTCATCCGCGTCCTTGGTCGCGTTTCCTCAATGGGCGCTTAAGCCGCATCAAGCAATTCTCATAAGAAGCCGA TCAGCCTAGTGACTAAGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MSKVFSKARRNVKERPSIFGGKLMKNEQKQEFKSSGVLALLGLVGFSTAIIATPWNRQIQDSKSETARQKAEVVGYQVVQ IYREASKNTVSEDKAGGRLPASVSEDKSSLTAENLRSTGTMGTDPWGQPYRYRILSGADTTGKIKILVWSSGPNQKVETA SLDDEGKSLDSQPLYEGDDLGVLLSVSHN
Sequences:
>Translated_189_residues MSKVFSKARRNVKERPSIFGGKLMKNEQKQEFKSSGVLALLGLVGFSTAIIATPWNRQIQDSKSETARQKAEVVGYQVVQ IYREASKNTVSEDKAGGRLPASVSEDKSSLTAENLRSTGTMGTDPWGQPYRYRILSGADTTGKIKILVWSSGPNQKVETA SLDDEGKSLDSQPLYEGDDLGVLLSVSHN >Mature_188_residues SKVFSKARRNVKERPSIFGGKLMKNEQKQEFKSSGVLALLGLVGFSTAIIATPWNRQIQDSKSETARQKAEVVGYQVVQI YREASKNTVSEDKAGGRLPASVSEDKSSLTAENLRSTGTMGTDPWGQPYRYRILSGADTTGKIKILVWSSGPNQKVETAS LDDEGKSLDSQPLYEGDDLGVLLSVSHN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20626; Mature: 20495
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVFSKARRNVKERPSIFGGKLMKNEQKQEFKSSGVLALLGLVGFSTAIIATPWNRQIQ CCHHHHHHHHCHHHCCCHHCCHHHCCHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCHH DSKSETARQKAEVVGYQVVQIYREASKNTVSEDKAGGRLPASVSEDKSSLTAENLRSTGT CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC MGTDPWGQPYRYRILSGADTTGKIKILVWSSGPNQKVETASLDDEGKSLDSQPLYEGDDL CCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCC GVLLSVSHN EEEEEECCC >Mature Secondary Structure SKVFSKARRNVKERPSIFGGKLMKNEQKQEFKSSGVLALLGLVGFSTAIIATPWNRQIQ CHHHHHHHHCHHHCCCHHCCHHHCCHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCHH DSKSETARQKAEVVGYQVVQIYREASKNTVSEDKAGGRLPASVSEDKSSLTAENLRSTGT CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC MGTDPWGQPYRYRILSGADTTGKIKILVWSSGPNQKVETASLDDEGKSLDSQPLYEGDDL CCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCC GVLLSVSHN EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA