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The map label for this gene is yqxC [H]

Identifier: 42521830

GI number: 42521830

Start: 185956

End: 186732

Strand: Direct

Name: yqxC [H]

Synonym: Bd0200

Alternate gene names: 42521830

Gene position: 185956-186732 (Clockwise)

Preceding gene: 42521829

Following gene: 42521831

Centisome position: 4.92

GC content: 48.52

Gene sequence:

>777_bases
ATGGGCGAAAAACTGCGTTTGGATCTTTATCTTGTCGAAAAGGGTCTGGCGCAGTCGCGCACTCATGCTCAGGAGCTGAT
CGAAGCCGGTCAGGTTTTTCTTTTTGAAAATTCGCAAAAGCGTATTCTGAAAAAGGCAAGCTTTGCTGTCTTGGACTCTC
ATCACGGAAAAATTGAAGTTGAAGCCGGTCCTGCGAATCGTTTTGTGTCCCGCGGGGGCTTGAAACTGGAAGGCGCTTTG
GCGCAAGCCGGGGTTTTCGTGCAAGGCCTGAAAGTTCTGGACGTGGGTATTTCCACAGGGGGCTTTACCGATTGCCTTCT
GCAAAAGGGCGCTGCCCAAGTGCTGGGTGTGGACGTGGGCCACGGCCAGGTTCACAGCAGTCTTCTTTCCAATCCGCGAC
TGACAGTTATTGAGGGCATCAATGCCCGCAATCTTTCCCGCGAAGAAGCGGTCAATCAGGCGACCCCAAAGGAAAAGTTT
GATCTGGTCGTCATGGACGTTTCTTTTATTTCCATCTCTTTGATTGTTCCGGAATTAGCACATTTTCTTAAGACTGAAGG
CTGTCTTTTAAGTCTGGTGAAGCCCCAATTCGAGGTCGGCGTTGACGGCCTTGCCAAGGGGGGTATAGTCAAAGATGTTT
CACTGTATAAAGAAGTCGAGACGCGAATAAAGGAACTTTGTTCGCAAAATGGATTTAAGGTTCTCGACTACTTCCCATCT
CCGATTCAGGGAAAGGACGGAAATAATGAGTTCTTTGTTTTTGCCAAAAAAATCTAG

Upstream 100 bases:

>100_bases
GATGTCAGTGCTTCGACTTTGGCGGAACTGCACAAGGTGTCTGCCGATGCTCCGCTTTTGGAGTATCTGATCAGCTTTAA
TCAAAACCGTCAGGTGTAAT

Downstream 100 bases:

>100_bases
TTGGATTGTCTTGTTCCTGTTTCTGGCAAGCTGTCAGAACTTAAGAACCCGTGAAGACATCCGCAAAACTCCGCAGCCGA
CTCCCAGCCGTCCGGGGGTG

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MGEKLRLDLYLVEKGLAQSRTHAQELIEAGQVFLFENSQKRILKKASFAVLDSHHGKIEVEAGPANRFVSRGGLKLEGAL
AQAGVFVQGLKVLDVGISTGGFTDCLLQKGAAQVLGVDVGHGQVHSSLLSNPRLTVIEGINARNLSREEAVNQATPKEKF
DLVVMDVSFISISLIVPELAHFLKTEGCLLSLVKPQFEVGVDGLAKGGIVKDVSLYKEVETRIKELCSQNGFKVLDYFPS
PIQGKDGNNEFFVFAKKI

Sequences:

>Translated_258_residues
MGEKLRLDLYLVEKGLAQSRTHAQELIEAGQVFLFENSQKRILKKASFAVLDSHHGKIEVEAGPANRFVSRGGLKLEGAL
AQAGVFVQGLKVLDVGISTGGFTDCLLQKGAAQVLGVDVGHGQVHSSLLSNPRLTVIEGINARNLSREEAVNQATPKEKF
DLVVMDVSFISISLIVPELAHFLKTEGCLLSLVKPQFEVGVDGLAKGGIVKDVSLYKEVETRIKELCSQNGFKVLDYFPS
PIQGKDGNNEFFVFAKKI
>Mature_257_residues
GEKLRLDLYLVEKGLAQSRTHAQELIEAGQVFLFENSQKRILKKASFAVLDSHHGKIEVEAGPANRFVSRGGLKLEGALA
QAGVFVQGLKVLDVGISTGGFTDCLLQKGAAQVLGVDVGHGQVHSSLLSNPRLTVIEGINARNLSREEAVNQATPKEKFD
LVVMDVSFISISLIVPELAHFLKTEGCLLSLVKPQFEVGVDGLAKGGIVKDVSLYKEVETRIKELCSQNGFKVLDYFPSP
IQGKDGNNEFFVFAKKI

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28019; Mature: 27888

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKLRLDLYLVEKGLAQSRTHAQELIEAGQVFLFENSQKRILKKASFAVLDSHHGKIEV
CCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEEECCCCEEEE
EAGPANRFVSRGGLKLEGALAQAGVFVQGLKVLDVGISTGGFTDCLLQKGAAQVLGVDVG
ECCCHHHHHHCCCCEEECHHHHHHHHHHCEEEEEEECCCCCHHHHHHHCCCHHEEEEECC
HGQVHSSLLSNPRLTVIEGINARNLSREEAVNQATPKEKFDLVVMDVSFISISLIVPELA
CCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCHHCCEEEEEHHHHHHHHHHHHHH
HFLKTEGCLLSLVKPQFEVGVDGLAKGGIVKDVSLYKEVETRIKELCSQNGFKVLDYFPS
HHHHCCCCEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
PIQGKDGNNEFFVFAKKI
CCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
GEKLRLDLYLVEKGLAQSRTHAQELIEAGQVFLFENSQKRILKKASFAVLDSHHGKIEV
CCEEEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHEEECCCCEEEE
EAGPANRFVSRGGLKLEGALAQAGVFVQGLKVLDVGISTGGFTDCLLQKGAAQVLGVDVG
ECCCHHHHHHCCCCEEECHHHHHHHHHHCEEEEEEECCCCCHHHHHHHCCCHHEEEEECC
HGQVHSSLLSNPRLTVIEGINARNLSREEAVNQATPKEKFDLVVMDVSFISISLIVPELA
CCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCHHCCEEEEEHHHHHHHHHHHHHH
HFLKTEGCLLSLVKPQFEVGVDGLAKGGIVKDVSLYKEVETRIKELCSQNGFKVLDYFPS
HHHHCCCCEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
PIQGKDGNNEFFVFAKKI
CCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]