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The map label for this gene is dapF [H]

Identifier: 42521693

GI number: 42521693

Start: 40246

End: 41103

Strand: Direct

Name: dapF [H]

Synonym: Bd0045

Alternate gene names: 42521693

Gene position: 40246-41103 (Clockwise)

Preceding gene: 42521692

Following gene: 42521694

Centisome position: 1.06

GC content: 54.66

Gene sequence:

>858_bases
ATGAACCGTCTGTTGCCGCTTTCCATCACCAAGATGTCCGGAGCGGGAAATACGTTTTCACTGATCGATGCCCGCAAGGG
ATCAGCCTGGGCGGATCTTGAAAAAACCCTGGGCCTGACCCGCCCGCAGTTTGCAAAGCTGGTGTGCGACCGTGTTCTGG
GCCTGAGCACCGATGGCTTCTTGCTGATCGAAGATGGCAGTGAGGGTTTTGATTTTCATTGGGACTTTTATAACAACGAC
GGCTCCACCGCGGAAATGTGCGGCAATGCTGCCAGATGTGCGGCCCGCTTTTGTTATGACACGTTGGAAGCCAAGGGCAC
CGGCGTTTTGCGCTTTAAAACCGGCGCAGGCCTAGTGGTGGCGCAAATTCTGGGTAACAGCCGCATCCGCGTGAAAATGC
CGGAAGCCCGCTTTATCCAGGAACTGATCGAACTAAAAACCAAATCCAGCTCCACGGAAAAATTCGCACTGGTGAACACC
GGTGTTCCGCACTTGGTGCAAAAGATCCATGCATTTTCAGACACGGTGGCTTTAAAAGACATGGCCCGCGAAGCCAGATC
CCATCACGATCTGCAGCCCGCAGGTGCCAACGTCACCTTCTATGCCGAGGAGTCCGCGGGAAAAATCAGAGCCGTGACTT
TCGAGCGCGGGGTGGAAGACTACACCTTGGCCTGCGGCACGGGAGCTGTGGCGGCAGCGTTCGTTCATAACAAAGAAACC
AAAGAATCCAGCGTGGAAGTGCAAATGCCCGGGGGTTCAATGCAAGTGACATTCGTCAGTGGTGATCCCCACCCGCTGAT
GGAAGGGGACGCGGTTTTTGTCGGGGACTTTAAATACAATCTTGAGGTGGTAGGATGA

Upstream 100 bases:

>100_bases
GTGAGCCGACCTTCAAGGATGCCAGCCAGGCTCCGAGTCCAAAAAAGAAATCCATCAAAAAAAACCAGGATGACGACACC
GCCGCCGAGACGGAGGAGCC

Downstream 100 bases:

>100_bases
AAAATTTCAAAGGCACGTTCACCGCACTGGTAACGCCATTTAAAAACGGAAAGATCGACTTCGCTTCGCTGGATAAGCTT
CTGAAGCAACAACTGGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNRLLPLSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDGSEGFDFHWDFYNND
GSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSRIRVKMPEARFIQELIELKTKSSSTEKFALVNT
GVPHLVQKIHAFSDTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAAFVHNKET
KESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEVVG

Sequences:

>Translated_285_residues
MNRLLPLSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDGSEGFDFHWDFYNND
GSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSRIRVKMPEARFIQELIELKTKSSSTEKFALVNT
GVPHLVQKIHAFSDTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAAFVHNKET
KESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEVVG
>Mature_285_residues
MNRLLPLSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDGSEGFDFHWDFYNND
GSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSRIRVKMPEARFIQELIELKTKSSSTEKFALVNT
GVPHLVQKIHAFSDTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAAFVHNKET
KESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEVVG

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=286, Percent_Identity=30.4195804195804, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30869; Mature: 30869

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLLPLSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGF
CCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
LLIEDGSEGFDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVV
EEEECCCCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE
AQILGNSRIRVKMPEARFIQELIELKTKSSSTEKFALVNTGVPHLVQKIHAFSDTVALKD
EEHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
MAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAAFVHNKET
HHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCHHEEHHHCCCCC
KESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEVVG
CCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEC
>Mature Secondary Structure
MNRLLPLSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGF
CCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
LLIEDGSEGFDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVV
EEEECCCCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE
AQILGNSRIRVKMPEARFIQELIELKTKSSSTEKFALVNTGVPHLVQKIHAFSDTVALKD
EEHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
MAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAAFVHNKET
HHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCHHEEHHHCCCCC
KESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEVVG
CCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA