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The map label for this gene is jag [H]

Identifier: 41410444

GI number: 41410444

Start: 4826629

End: 4827216

Strand: Reverse

Name: jag [H]

Synonym: MAP4346c

Alternate gene names: 41410444

Gene position: 4827216-4826629 (Counterclockwise)

Preceding gene: 41410445

Following gene: 41410443

Centisome position: 99.95

GC content: 70.41

Gene sequence:

>588_bases
CTGGGCTGCGGCCCATGGATGAGGGAGATAAAGACATGGCAGACGCCGACACCACCGAACGCGAGCTCGACACCGCAGCG
CCCGCCGAGCCGGAACCGGCCGACGGCGACGAGGCCGACGACCTGGAGGAGCGGGTTGGTCGCCGAGGGCGAGATCGCCG
GCGACTACCTGGAGGAGCTGCTGGACCTGTTGGACTTCGACGGCGACATCGACTTGGACGTCGAGGGCAGCCGGGCTGTG
GTGAGCATCGACGGCAGCGACGACCTGAACAAGTTGGTGGGCCGCGGCGGCGAGGTTCTCGATGCGCTGCAGGAGCTCAC
CCGGCTCGCCGTGCACCAGAAGACCGGCGTGCGGAGCCGGCTGATGCTCGACATCGCGAGCTGGCGTCGGCGGCGCCGGG
AGGAACTCGCGGCGCTGGGCGACAAGGTGGCGCGGCGGGTGCTCGAATCGGGGCAACGCGAAGAGCTCGCGCCGATGACC
CCGTTCGAGCGCAAGATCGTGCACGACGCGGTCGCGGCGGTGCCCGGGGTGCACAGCGAAAGCGAGGGCGTCGAGCCGTC
GCGACGCGTGGTCGTCCTGCACGACTGA

Upstream 100 bases:

>100_bases
GCGCCGAGCCGCACCCCGCGTCCCGGGGCGCGACCGAAGAAGCGCAAACGCTGATCGGGGCGGACAAGCTATCGGGGCCG
CCGCGGCAGGGCGACCCTAA

Downstream 100 bases:

>100_bases
CGGCCCGAAGTTACAGCGGTGTAGTTCGCTGCCGTGTGGCGGCCGTCCGAACGTTGAAGGTGCACACGCCAACCAGGGGA
TGTTTCACGTGAAACATGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MGCGPWMREIKTWQTPTPPNASSTPQRPPSRNRPTATRPTTWRSGLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGSRAV
VSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIASWRRRRREELAALGDKVARRVLESGQREELAPMT
PFERKIVHDAVAAVPGVHSESEGVEPSRRVVVLHD

Sequences:

>Translated_195_residues
MGCGPWMREIKTWQTPTPPNASSTPQRPPSRNRPTATRPTTWRSGLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGSRAV
VSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIASWRRRRREELAALGDKVARRVLESGQREELAPMT
PFERKIVHDAVAAVPGVHSESEGVEPSRRVVVLHD
>Mature_194_residues
GCGPWMREIKTWQTPTPPNASSTPQRPPSRNRPTATRPTTWRSGLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGSRAVV
SIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIASWRRRRREELAALGDKVARRVLESGQREELAPMTP
FERKIVHDAVAAVPGVHSESEGVEPSRRVVVLHD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 21591; Mature: 21459

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCGPWMREIKTWQTPTPPNASSTPQRPPSRNRPTATRPTTWRSGLVAEGEIAGDYLEEL
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LDLLDFDGDIDLDVEGSRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSR
HHHHCCCCCCEEEECCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHH
LMLDIASWRRRRREELAALGDKVARRVLESGQREELAPMTPFERKIVHDAVAAVPGVHSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
SEGVEPSRRVVVLHD
CCCCCCCCCEEEEEC
>Mature Secondary Structure 
GCGPWMREIKTWQTPTPPNASSTPQRPPSRNRPTATRPTTWRSGLVAEGEIAGDYLEEL
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LDLLDFDGDIDLDVEGSRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSR
HHHHCCCCCCEEEECCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHH
LMLDIASWRRRRREELAALGDKVARRVLESGQREELAPMTPFERKIVHDAVAAVPGVHSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
SEGVEPSRRVVVLHD
CCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]