| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is frc [H]
Identifier: 41410396
GI number: 41410396
Start: 4765111
End: 4767441
Strand: Reverse
Name: frc [H]
Synonym: MAP4298c
Alternate gene names: 41410396
Gene position: 4767441-4765111 (Counterclockwise)
Preceding gene: 41410397
Following gene: 41410395
Centisome position: 98.71
GC content: 73.32
Gene sequence:
>2331_bases GTGGGCCCGGCGCCGTTCGCGCACTGGCGCGTGCTGGAGTTCAGCAACGGCCTGGCGGTCTCCTACTGCGGCAAGATGTT CGCCGACGCCGGCGCCGACGTGGTGAAAGTGGAGTCCCCCCAAGGGGATTCGATGCGCCGCTGGTCGGCGGGCGGGCCGC CCGGGGCGCTGTTCGGCTATCTGGCTGCCGGCAAGAGGTCGGTGGTCGGCCGCGGCCGGGCCGAGGTCGCGGCGCTGCTG GCCGGCGCCGACCTGGTGCTCACCGACCTCACCGACGGCTGGACGCTGGACGAACTCACCGGGCGCACCGGGCCTTCGGC GGTGGTGGTGGCGATCACCCCGTTCGGCACCACCGGCCCCTACGTCGACCAGCAGGTGGTGGCCAACGAGTTCATTCTGC AGGCGCTGTGCGGGTCGATCGCCGGGCGGGGCTGGCCGGGCGACGAGCCGGTGCAGGCCGGCGGCCGGCTGGGCGAATGG CTGGCGGGCACGTTCGCCGCGGCGGCCGCGGCGGCGACCGCCCGGCATGCGGCCCGCACCGGCCGCGGCGAGGTGATCGA TGTCTCGACTTACGAGGCCATGGTGATCGCCATGGGCGGTCTGTCCGCCATGTCGGCGAGCGTGCTGGGGGCCGATTCGC TGCTGCACGAACGCAGTTTGGAGCTGCCCTCGATCGTCCCCACCGCCGACGGCATGGTCGGCTTCTGCACCATCACCGCC CAGCAGTTCCAGGATTTTCTGGTGATGATCGACCGCGCCGACCTCGTCGACGACGCCGAGCTGGCATCCTTCGCCGGCCG CGTCGCGCGCCGCGACGAATTCCTGGACATGGTCACCGGGTGGACCCGCACCCGCACCACCCAGGAGATCGTCGACCTGG CGGTGGCGTTCCGAATCCCGGTGGCGCCCATCGCCAATCCCGAGACACTGGCCAAGCTGGACCACTTCGTGCAACGCGTC GTGTTCGTCGAGTCCCCGGCCGGTGTGCTGGCGCCGCGGGTGCCCTACCGCAGCGACGCCATCACCACCCGGCCGCCGTC GGAGCCGCCGGCGTTGGGCGCCGACAACGGGCGGGTGCACTGGCCGCCCCGGCCCGAGCCGGCCCGCGGCGAGGACGCCG GCACCCTTCCGCTGTCCGGCATCCGGGTCACCGACCTCACCGCGTTCTGGGCCGGCCCGGTCGCCACCCAACTGCTGGGC GCCCTGGGCGCCGACGTGATCAAGATCGAGGGAGTGCGCCGGCCGGACGGCATGCGGTTCTCCGCGGGCCGCCCGCCCGA CTGGGACCAGTGGTGGGAGTGGGGCCCGGTCTTCCTGTGCAGCAACAACAACAAGCGGGGCATCAGCGTCGACCTGGGCA CCGAGGCGGGACGCAGCATCGCGCTAGGGCTCATTGCCGCAGGCGATCTCGTCGTCGAGAACTTCTCGCCCCGGGTGATG GCGAACTTCGGCCTGGAATGGGACGCGGTGCGCGCGGCCAACCCGCGCGCCGTCATGATCCGGATGCCCGCCTTCGGCCT GGACGGCCCGTGGCGCGATCGGGTCGGATTCGCCCAGACCATGGAGCAGGCGACGGGCATGGCCTGGATGACCGGACACC CCGAGGGCCCGCCGGTGATTCCGCGCGGCGTCTGCGACCCGATCGCCGGCCTGCACGCCGCTTTCGCGGCAGTGGCCGCG CTGACCGTCCGCGACCGCGAGGGCACCGGCATGCAGGTGGAAGCGACCATGGTGGAGGCGGCGCTGAACGTGGCGGCCGA GATGCTGGTCGAATACTCGCGCAACGGAATCGCGCTGCGCCGCAATAGAAACCGAGGACCAGGCGCCAGCCCGCAGGGCG TGTACCGGTGCCGCGGTGACGACGCGTGGGTGGCGCTGGCGGCGCTGGACGACACCGCCCGCGCGTCGCTGGCCCGGCTG CTGGGCCGCGCGGAGCCGGGCGACACCGGCTGGGACGAGCACGCCGACGACGTCGACAAGCTCATCTCGGACTGGGCCGC GGGCCGTACGGTGGCCGACGCGGTGGACGCGCTGCGCGCCGCCGGGGTGGCCGCCGCGCCCGTCACACCGGCCGCGGCGC TGCTGGCCGACCCGCAGCTGCACGCCCGCGGCTTCTGGGAGACCGTCGATCATCCCGTCGCCGGCACCTTCCTGTGCACC GGAATGCCTTTCGCGTTCCTCGGCAAACCGCGGCGCTGGCTGCGCCGGGTGCCGCCGCGCTACGGCGAGCACACCGCCGA GGTGCTCACCGAGCTGCTGGGGCACAGCGACGCCGACCTGGCCGAGCTGCGGGCATCGGGAACCATCAGCGACCGGCCGG CGGGCCTGTGA
Upstream 100 bases:
>100_bases TGACGCAATTCGCCCTGCAGGCCCAGGCGTCAGCCCAGGCGCCGGTGACGGTCGAGGCAGCCGGGATCGCCGGCCGCGCC ACCACATTGGGCAACTGAGC
Downstream 100 bases:
>100_bases CATGGCGGTCAGCCTGTGCGTTCCGCCCCACGCCGGCGAGTTGTGCGCAGCGGTGCGCTTCCTGGTGCGCCGGGACTCGG TGGTGATCGAGCTGACCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Formyl-CoA transferase [H]
Number of amino acids: Translated: 776; Mature: 775
Protein sequence:
>776_residues MGPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGYLAAGKRSVVGRGRAEVAALL AGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGPYVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEW LAGTFAAAAAAATARHAARTGRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIPVAPIANPETLAKLDHFVQRV VFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVHWPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLG ALGADVIKIEGVRRPDGMRFSAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVIPRGVCDPIAGLHAAFAAVAA LTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALRRNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARL LGRAEPGDTGWDEHADDVDKLISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL
Sequences:
>Translated_776_residues MGPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGYLAAGKRSVVGRGRAEVAALL AGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGPYVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEW LAGTFAAAAAAATARHAARTGRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIPVAPIANPETLAKLDHFVQRV VFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVHWPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLG ALGADVIKIEGVRRPDGMRFSAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVIPRGVCDPIAGLHAAFAAVAA LTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALRRNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARL LGRAEPGDTGWDEHADDVDKLISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL >Mature_775_residues GPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGYLAAGKRSVVGRGRAEVAALLA GADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGPYVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEWL AGTFAAAAAAATARHAARTGRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITAQ QFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIPVAPIANPETLAKLDHFVQRVV FVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVHWPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLGA LGADVIKIEGVRRPDGMRFSAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVMA NFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVIPRGVCDPIAGLHAAFAAVAAL TVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALRRNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARLL GRAEPGDTGWDEHADDVDKLISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCTG MPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL
Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]
Homologues:
Organism=Homo sapiens, GI300863128, Length=437, Percent_Identity=25.1716247139588, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI300863124, Length=463, Percent_Identity=24.1900647948164, Blast_Score=132, Evalue=1e-30, Organism=Homo sapiens, GI300863126, Length=439, Percent_Identity=24.373576309795, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=22.9828850855746, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=22.7722772277228, Blast_Score=73, Evalue=1e-12, Organism=Escherichia coli, GI1788717, Length=424, Percent_Identity=28.5377358490566, Blast_Score=141, Evalue=2e-34, Organism=Escherichia coli, GI87082093, Length=337, Percent_Identity=25.8160237388724, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=25.7907542579075, Blast_Score=88, Evalue=2e-18, Organism=Drosophila melanogaster, GI24648431, Length=412, Percent_Identity=27.9126213592233, Blast_Score=152, Evalue=9e-37, Organism=Drosophila melanogaster, GI24585488, Length=318, Percent_Identity=26.1006289308176, Blast_Score=82, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003673 - InterPro: IPR017659 [H]
Pfam domain/function: PF02515 CoA_transf_3 [H]
EC number: =2.8.3.16 [H]
Molecular weight: Translated: 82190; Mature: 82059
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGY CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH LAAGKRSVVGRGRAEVAALLAGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGP HHCCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCCC YVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEWLAGTFAAAAAAATARHAART CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC GRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA CCCCEEEECHHCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEH QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC VAPIANPETLAKLDHFVQRVVFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVH CCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE WPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLGALGADVIKIEGVRRPDGMRF CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCEE SAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM CCCCCCCHHHHHCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCEEEECCCCCEE ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVI EECCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCC PRGVCDPIAGLHAAFAAVAALTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALR CCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE RNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARLLGRAEPGDTGWDEHADDVDK ECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH LISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHCCCHHHHCCCCCCEEEEC GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL CCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure GPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGY CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH LAAGKRSVVGRGRAEVAALLAGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGP HHCCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCCC YVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEWLAGTFAAAAAAATARHAART CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC GRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA CCCCEEEECHHCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEH QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIP HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC VAPIANPETLAKLDHFVQRVVFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVH CCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE WPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLGALGADVIKIEGVRRPDGMRF CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCEE SAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM CCCCCCCHHHHHCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCEEEECCCCCEE ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVI EECCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCC PRGVCDPIAGLHAAFAAVAALTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALR CCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE RNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARLLGRAEPGDTGWDEHADDVDK ECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH LISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHCCCHHHHCCCCCCEEEEC GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL CCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA