Definition Mycobacterium avium subsp. paratuberculosis K-10, complete genome.
Accession NC_002944
Length 4,829,781

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The map label for this gene is frc [H]

Identifier: 41410396

GI number: 41410396

Start: 4765111

End: 4767441

Strand: Reverse

Name: frc [H]

Synonym: MAP4298c

Alternate gene names: 41410396

Gene position: 4767441-4765111 (Counterclockwise)

Preceding gene: 41410397

Following gene: 41410395

Centisome position: 98.71

GC content: 73.32

Gene sequence:

>2331_bases
GTGGGCCCGGCGCCGTTCGCGCACTGGCGCGTGCTGGAGTTCAGCAACGGCCTGGCGGTCTCCTACTGCGGCAAGATGTT
CGCCGACGCCGGCGCCGACGTGGTGAAAGTGGAGTCCCCCCAAGGGGATTCGATGCGCCGCTGGTCGGCGGGCGGGCCGC
CCGGGGCGCTGTTCGGCTATCTGGCTGCCGGCAAGAGGTCGGTGGTCGGCCGCGGCCGGGCCGAGGTCGCGGCGCTGCTG
GCCGGCGCCGACCTGGTGCTCACCGACCTCACCGACGGCTGGACGCTGGACGAACTCACCGGGCGCACCGGGCCTTCGGC
GGTGGTGGTGGCGATCACCCCGTTCGGCACCACCGGCCCCTACGTCGACCAGCAGGTGGTGGCCAACGAGTTCATTCTGC
AGGCGCTGTGCGGGTCGATCGCCGGGCGGGGCTGGCCGGGCGACGAGCCGGTGCAGGCCGGCGGCCGGCTGGGCGAATGG
CTGGCGGGCACGTTCGCCGCGGCGGCCGCGGCGGCGACCGCCCGGCATGCGGCCCGCACCGGCCGCGGCGAGGTGATCGA
TGTCTCGACTTACGAGGCCATGGTGATCGCCATGGGCGGTCTGTCCGCCATGTCGGCGAGCGTGCTGGGGGCCGATTCGC
TGCTGCACGAACGCAGTTTGGAGCTGCCCTCGATCGTCCCCACCGCCGACGGCATGGTCGGCTTCTGCACCATCACCGCC
CAGCAGTTCCAGGATTTTCTGGTGATGATCGACCGCGCCGACCTCGTCGACGACGCCGAGCTGGCATCCTTCGCCGGCCG
CGTCGCGCGCCGCGACGAATTCCTGGACATGGTCACCGGGTGGACCCGCACCCGCACCACCCAGGAGATCGTCGACCTGG
CGGTGGCGTTCCGAATCCCGGTGGCGCCCATCGCCAATCCCGAGACACTGGCCAAGCTGGACCACTTCGTGCAACGCGTC
GTGTTCGTCGAGTCCCCGGCCGGTGTGCTGGCGCCGCGGGTGCCCTACCGCAGCGACGCCATCACCACCCGGCCGCCGTC
GGAGCCGCCGGCGTTGGGCGCCGACAACGGGCGGGTGCACTGGCCGCCCCGGCCCGAGCCGGCCCGCGGCGAGGACGCCG
GCACCCTTCCGCTGTCCGGCATCCGGGTCACCGACCTCACCGCGTTCTGGGCCGGCCCGGTCGCCACCCAACTGCTGGGC
GCCCTGGGCGCCGACGTGATCAAGATCGAGGGAGTGCGCCGGCCGGACGGCATGCGGTTCTCCGCGGGCCGCCCGCCCGA
CTGGGACCAGTGGTGGGAGTGGGGCCCGGTCTTCCTGTGCAGCAACAACAACAAGCGGGGCATCAGCGTCGACCTGGGCA
CCGAGGCGGGACGCAGCATCGCGCTAGGGCTCATTGCCGCAGGCGATCTCGTCGTCGAGAACTTCTCGCCCCGGGTGATG
GCGAACTTCGGCCTGGAATGGGACGCGGTGCGCGCGGCCAACCCGCGCGCCGTCATGATCCGGATGCCCGCCTTCGGCCT
GGACGGCCCGTGGCGCGATCGGGTCGGATTCGCCCAGACCATGGAGCAGGCGACGGGCATGGCCTGGATGACCGGACACC
CCGAGGGCCCGCCGGTGATTCCGCGCGGCGTCTGCGACCCGATCGCCGGCCTGCACGCCGCTTTCGCGGCAGTGGCCGCG
CTGACCGTCCGCGACCGCGAGGGCACCGGCATGCAGGTGGAAGCGACCATGGTGGAGGCGGCGCTGAACGTGGCGGCCGA
GATGCTGGTCGAATACTCGCGCAACGGAATCGCGCTGCGCCGCAATAGAAACCGAGGACCAGGCGCCAGCCCGCAGGGCG
TGTACCGGTGCCGCGGTGACGACGCGTGGGTGGCGCTGGCGGCGCTGGACGACACCGCCCGCGCGTCGCTGGCCCGGCTG
CTGGGCCGCGCGGAGCCGGGCGACACCGGCTGGGACGAGCACGCCGACGACGTCGACAAGCTCATCTCGGACTGGGCCGC
GGGCCGTACGGTGGCCGACGCGGTGGACGCGCTGCGCGCCGCCGGGGTGGCCGCCGCGCCCGTCACACCGGCCGCGGCGC
TGCTGGCCGACCCGCAGCTGCACGCCCGCGGCTTCTGGGAGACCGTCGATCATCCCGTCGCCGGCACCTTCCTGTGCACC
GGAATGCCTTTCGCGTTCCTCGGCAAACCGCGGCGCTGGCTGCGCCGGGTGCCGCCGCGCTACGGCGAGCACACCGCCGA
GGTGCTCACCGAGCTGCTGGGGCACAGCGACGCCGACCTGGCCGAGCTGCGGGCATCGGGAACCATCAGCGACCGGCCGG
CGGGCCTGTGA

Upstream 100 bases:

>100_bases
TGACGCAATTCGCCCTGCAGGCCCAGGCGTCAGCCCAGGCGCCGGTGACGGTCGAGGCAGCCGGGATCGCCGGCCGCGCC
ACCACATTGGGCAACTGAGC

Downstream 100 bases:

>100_bases
CATGGCGGTCAGCCTGTGCGTTCCGCCCCACGCCGGCGAGTTGTGCGCAGCGGTGCGCTTCCTGGTGCGCCGGGACTCGG
TGGTGATCGAGCTGACCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 776; Mature: 775

Protein sequence:

>776_residues
MGPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGYLAAGKRSVVGRGRAEVAALL
AGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGPYVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEW
LAGTFAAAAAAATARHAARTGRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA
QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIPVAPIANPETLAKLDHFVQRV
VFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVHWPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLG
ALGADVIKIEGVRRPDGMRFSAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM
ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVIPRGVCDPIAGLHAAFAAVAA
LTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALRRNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARL
LGRAEPGDTGWDEHADDVDKLISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT
GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL

Sequences:

>Translated_776_residues
MGPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGYLAAGKRSVVGRGRAEVAALL
AGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGPYVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEW
LAGTFAAAAAAATARHAARTGRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA
QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIPVAPIANPETLAKLDHFVQRV
VFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVHWPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLG
ALGADVIKIEGVRRPDGMRFSAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM
ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVIPRGVCDPIAGLHAAFAAVAA
LTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALRRNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARL
LGRAEPGDTGWDEHADDVDKLISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT
GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL
>Mature_775_residues
GPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGYLAAGKRSVVGRGRAEVAALLA
GADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGPYVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEWL
AGTFAAAAAAATARHAARTGRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITAQ
QFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIPVAPIANPETLAKLDHFVQRVV
FVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVHWPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLGA
LGADVIKIEGVRRPDGMRFSAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVMA
NFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVIPRGVCDPIAGLHAAFAAVAAL
TVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALRRNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARLL
GRAEPGDTGWDEHADDVDKLISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCTG
MPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=437, Percent_Identity=25.1716247139588, Blast_Score=144, Evalue=3e-34,
Organism=Homo sapiens, GI300863124, Length=463, Percent_Identity=24.1900647948164, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI300863126, Length=439, Percent_Identity=24.373576309795, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=22.9828850855746, Blast_Score=76, Evalue=1e-13,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=22.7722772277228, Blast_Score=73, Evalue=1e-12,
Organism=Escherichia coli, GI1788717, Length=424, Percent_Identity=28.5377358490566, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87082093, Length=337, Percent_Identity=25.8160237388724, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=25.7907542579075, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648431, Length=412, Percent_Identity=27.9126213592233, Blast_Score=152, Evalue=9e-37,
Organism=Drosophila melanogaster, GI24585488, Length=318, Percent_Identity=26.1006289308176, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 82190; Mature: 82059

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGY
CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
LAAGKRSVVGRGRAEVAALLAGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGP
HHCCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCCC
YVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEWLAGTFAAAAAAATARHAART
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA
CCCCEEEECHHCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEH
QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
VAPIANPETLAKLDHFVQRVVFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVH
CCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
WPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLGALGADVIKIEGVRRPDGMRF
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCEE
SAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM
CCCCCCCHHHHHCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCEEEECCCCCEE
ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVI
EECCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCC
PRGVCDPIAGLHAAFAAVAALTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALR
CCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE
RNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARLLGRAEPGDTGWDEHADDVDK
ECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT
HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHCCCHHHHCCCCCCEEEEC
GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL
CCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GPAPFAHWRVLEFSNGLAVSYCGKMFADAGADVVKVESPQGDSMRRWSAGGPPGALFGY
CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
LAAGKRSVVGRGRAEVAALLAGADLVLTDLTDGWTLDELTGRTGPSAVVVAITPFGTTGP
HHCCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCCC
YVDQQVVANEFILQALCGSIAGRGWPGDEPVQAGGRLGEWLAGTFAAAAAAATARHAART
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GRGEVIDVSTYEAMVIAMGGLSAMSASVLGADSLLHERSLELPSIVPTADGMVGFCTITA
CCCCEEEECHHCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEH
QQFQDFLVMIDRADLVDDAELASFAGRVARRDEFLDMVTGWTRTRTTQEIVDLAVAFRIP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
VAPIANPETLAKLDHFVQRVVFVESPAGVLAPRVPYRSDAITTRPPSEPPALGADNGRVH
CCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
WPPRPEPARGEDAGTLPLSGIRVTDLTAFWAGPVATQLLGALGADVIKIEGVRRPDGMRF
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCEE
SAGRPPDWDQWWEWGPVFLCSNNNKRGISVDLGTEAGRSIALGLIAAGDLVVENFSPRVM
CCCCCCCHHHHHCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEEECCCEEEECCCCCEE
ANFGLEWDAVRAANPRAVMIRMPAFGLDGPWRDRVGFAQTMEQATGMAWMTGHPEGPPVI
EECCCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCC
PRGVCDPIAGLHAAFAAVAALTVRDREGTGMQVEATMVEAALNVAAEMLVEYSRNGIALR
CCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE
RNRNRGPGASPQGVYRCRGDDAWVALAALDDTARASLARLLGRAEPGDTGWDEHADDVDK
ECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LISDWAAGRTVADAVDALRAAGVAAAPVTPAAALLADPQLHARGFWETVDHPVAGTFLCT
HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHCCCHHHHCCCCCCEEEEC
GMPFAFLGKPRRWLRRVPPRYGEHTAEVLTELLGHSDADLAELRASGTISDRPAGL
CCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA