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The map label for this gene is choD

Identifier: 41410378

GI number: 41410378

Start: 4747368

End: 4747673

Strand: Direct

Name: choD

Synonym: MAP4280

Alternate gene names: NA

Gene position: 4747368-4747673 (Clockwise)

Preceding gene: 41410377

Following gene: 41410379

Centisome position: 98.29

GC content: 64.71

Gene sequence:

>306_bases
ATGAAGCCGGATTACGACGTCCTGATCATCGGTTCGGGTTTCGGGGGCAGCGTCAGCGCGTTGCGGCTGACCGAGAAGGG
CTACCGGGTGGGCGTGCTGGAGGCCGGCCGCCGGTTCGCCGACGAGGATTTCGCCGAGACATCCTGGGACCTGCACAAGT
TCCTGTGGGCGCCGAAGCTGGGCTGCTACGGCATCCAGCGCATCCACCCGCTCAAGAACGTGCTGATCCTGGCTTTCATG
TGGTTGCTGTGTTGGATGGCCGAAGGAGATTGGCCGCCCGGCGTCCCGCGACGACTCGACCGCTAA

Upstream 100 bases:

>100_bases
GGCGTGACGGCCGGCGCCGAGTGTCACGCCAGCGTGACGCTCGGGCGCGGCGGCCGGAGGCCCCTGGCTTGTTACCGGCG
GGTAAGGCCATACTGGTGCG

Downstream 100 bases:

>100_bases
TTGAGAGATGCGATTGGATCGCTGTGTAAGGACACGTCGGCGTGGTCGTCTGCTGGGTTGATCTGGACAATGACGGTTAC
GGAGGTGGTTGTGGCACAAC

Product: ChoD

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Glucose-Methanol-Choline Oxidoreductase; GMC Oxidoreductase; Oxidoreductase; Oxidase; Cholesterol Oxidase ChoD; Choline Dehydrogenase-Like Flavoprotein; Cholesterol-O2 Oxidoreductase; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; GMC Oxidoreductase Family Protein; Cholesterol Oxidase Chod; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Gmc Oxidoreductase Family Protein; GMC Oxidoreductase Family; Ferredoxin Domain Gmc Oxidoreductase; Cholesterol Oxidase ChoD

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAETSWDLHKFLWAPKLGCYGIQRIHPLKNVLILAFM
WLLCWMAEGDWPPGVPRRLDR

Sequences:

>Translated_101_residues
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAETSWDLHKFLWAPKLGCYGIQRIHPLKNVLILAFM
WLLCWMAEGDWPPGVPRRLDR
>Mature_101_residues
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAETSWDLHKFLWAPKLGCYGIQRIHPLKNVLILAFM
WLLCWMAEGDWPPGVPRRLDR

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11523; Mature: 11523

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAETSWDLHKFLWAPKL
CCCCCCEEEEECCCCCCCEEEEEECCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
GCYGIQRIHPLKNVLILAFMWLLCWMAEGDWPPGVPRRLDR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPDYDVLIIGSGFGGSVSALRLTEKGYRVGVLEAGRRFADEDFAETSWDLHKFLWAPKL
CCCCCCEEEEECCCCCCCEEEEEECCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
GCYGIQRIHPLKNVLILAFMWLLCWMAEGDWPPGVPRRLDR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA