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The map label for this gene is sigD

Identifier: 41410373

GI number: 41410373

Start: 4742530

End: 4743126

Strand: Direct

Name: sigD

Synonym: MAP4275

Alternate gene names: 41410373

Gene position: 4742530-4743126 (Clockwise)

Preceding gene: 41410372

Following gene: 41410374

Centisome position: 98.19

GC content: 68.34

Gene sequence:

>597_bases
TTGGAGATATCACCGTCGATGACAATTCCAGCAGGGGAACGTCTCGATGCTGTGGTCGCCAAGGCCGTGACGGGAGACCA
CAACGCACTCCGGGAGGTGCTGGAGACCATCCGCCCGATCGTCGTGCGATATTGCCGGGCACGCGTCGGCACGGTCGAGC
GGGGTGGCCTGTCAGCCGACGACGTGGCACAGGAGGTGTGCTTGGCGACCATCACGGCGCTGCCGCGGTATCGCGACCGC
GGGCGCCCCTTCCTGGCTTTCCTGTACGGCATCGCGGCCCACAAGGTCGCCGACGCGCACCGGGCCGCCGGCCGCGACCT
CGCCTACCCGACCGAGTCCATCCCCGATCGCTGGTCCAACGATGCGGGGCCCGAACAGCTTGCCATCGAAGCGGATTCGG
TGAGCCGGATGAGTGAACTGCTGGAAATCCTGCCGGCCAAGCAGCGCGAGATCCTGATCCTGCGCGTCGTGGTCGGCCTG
TCCGCCGAGGAGACCGCGGCCGCCGTCGGCAGCACCACCGGCGCGGTCCGCGTCGCCCAGCACCGCGCACTGTCGCGGTT
GAAGTCCGAGATGATCGCGGCAGGTGACTGTGCCTGA

Upstream 100 bases:

>100_bases
CGCCGGAGGAACGTGGCGTTCCGCTTGAAACGGCCGTCGGCCCGTTATTGTCATTTCGTTAGTTAGCCCGGTTGGCCCGC
GATGTGTCCGCTTCGTAACG

Downstream 100 bases:

>100_bases
ATCCCTGGATGAATTCGCCCGCACCGACCTGCTCCTCGATGCGCTCGCCCAGCGCCGGCCGGTTCCCCGGGGACAGGTCG
AGGACCCCGACGACCCCGAC

Product: RNA polymerase sigma factor SigD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRYRDR
GRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGL
SAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDCA

Sequences:

>Translated_198_residues
MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRYRDR
GRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGL
SAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDCA
>Mature_198_residues
MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRYRDR
GRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGL
SAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDCA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21240; Mature: 21240

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSAD
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSN
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ
CCCCHHEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
HRALSRLKSEMIAAGDCA
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSAD
CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSN
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ
CCCCHHEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
HRALSRLKSEMIAAGDCA
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]