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The map label for this gene is eccD4 [H]

Identifier: 41410338

GI number: 41410338

Start: 4707138

End: 4708496

Strand: Reverse

Name: eccD4 [H]

Synonym: MAP4240c

Alternate gene names: 41410338

Gene position: 4708496-4707138 (Counterclockwise)

Preceding gene: 41410348

Following gene: 41410337

Centisome position: 97.49

GC content: 75.86

Gene sequence:

>1359_bases
TTGGCCGTATCGACTACCGGGCTGTGCCGGGTCAGTGTGCACTGGGAAACCCAGGCCGTCGACGTGTCCCTGCCCGCCGA
AATCGCTGTCGCGGAGCTGATTCCGTCGCTCGTCGACATGCTCGGGGCCGGCGACGGCGGCGCCGGGCGCTACCGGTTGT
CGGCCGCGGGCGCCGCCGCGCTGGATCCGTCGACAACGTTGGCGCACAACCACATCGGCGACGGCGCGATCCTGGTGCTG
AGCCGGATCGACGTGCCGCTGCCCGCACCGCGCTACCGCGACATCGCCGACACCGTGTCGGCCGCGCTCGATGCGACGGC
CCGGCCGGGTGTTGCGGTCCGGCGGGTCGCGGGCGCGGCGGCGGCCGCGTCCTTCGTCACGGCGGGCGGGCTGCTGTTGG
TGCGAAACACGTTCAGCGCCGGCGTTGTTCGCGATTCCGGCGGTACGGTCGCGGTGCTGGTATCGACCACCCTGCTGACG
CTGGGGGCGGCCGCGGTCGCGCACCGCGGCTATCGGGACCGGGGCGCCGCCCTGGCGCTCGGCGCGATCGCCACCGTGTT
CGCGGGGCTGGCCGGTTTCGTGGCGGTGCCCGGCGCGCCGAGCCTTTCCCACGTGTTGCTGGCCGCGGCGGCCGCGGGCC
TCGCCGCGGTGTCGGCGATCGGGCTGTCGGGTTGCTGCGGCGCCGGGTTGCTCGCGCTCGCCTGCTGGTGCCTGATCCTC
GCCACCGCCGCGCTGGCCGGCGTGCTCAGCGGCGCGCCGCTGCCGACCGTCGCCTCGGCGGCCGGGCTGGTGTCGCTGTG
CCTGCTCGGGATGGCGGCGCGCGCGTCGCTCGCACTGGCGGGGTTGTCGCCCCGGCCGGCCACCGCAACAGCCGGCGGTC
CCGAGCCCGGCGAGGCGTGGGTGTCCGCCCGCGCGCGCCGCGCCGACCGGTGGTTGACCGGCCTGCTGGCCGGGTTGTCG
TCGTCGGCCACCGTTGCCGCCGCCGTCACCGTGCTGGCCGGCGCGCCCCGGCTGTGCTGCCTGGCGTTCGGAACCGGCAC
CGGCGCGCTGTTGCTGCTGCGCTCGCGTGGCGGTGACGGCACCCGGGCTCTGGTCTTCGCCGCCGGTGCAATCGTCACCA
CCGCAACGACATTCGGTGTCGCGGCCTGGAGCGCACCGCTGCCTGGCCCCTGGGTGGCGGCGACGACGGCGACCCTCGTC
GCCGCGGCGCTGTACCTCGGCTGCGCGGCGCGAACCTGCTCGCCGGTGCTGAGCCGGGCGGCCGACCTGCTGGAGTGGCT
GGCGCTGGCCGCCCTGGTGCCGCTCACCTGCTGGATCGCCGGGCTGTACGGCACGGTTCGGGGATTGACGCTCGGGTGA

Upstream 100 bases:

>100_bases
GGGAGCACCGGAATCGGCGGCAACTCACCTGTGCACAGCCGAATACCGGGGCGCCGATACCCGGCTATGTTCTGCGCAAT
CCGAGCGAAGGAGAATGGCG

Downstream 100 bases:

>100_bases
GGGTCGTGCGGCTGCTGGCGGTTTCGGCGCTGACGATGCTTCCGGTGTTCGAAACCCCTCCGGCGCACGCGGTTTCGCCG
CCGGCCGTCGAGGACAAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D4; Type VII secretion system protein eccD4; T7SS protein eccD4 [H]

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MAVSTTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLGAGDGGAGRYRLSAAGAAALDPSTTLAHNHIGDGAILVL
SRIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVAGAAAAASFVTAGGLLLVRNTFSAGVVRDSGGTVAVLVSTTLLT
LGAAAVAHRGYRDRGAALALGAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACWCLIL
ATAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEPGEAWVSARARRADRWLTGLLAGLS
SSATVAAAVTVLAGAPRLCCLAFGTGTGALLLLRSRGGDGTRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLV
AAALYLGCAARTCSPVLSRAADLLEWLALAALVPLTCWIAGLYGTVRGLTLG

Sequences:

>Translated_452_residues
MAVSTTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLGAGDGGAGRYRLSAAGAAALDPSTTLAHNHIGDGAILVL
SRIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVAGAAAAASFVTAGGLLLVRNTFSAGVVRDSGGTVAVLVSTTLLT
LGAAAVAHRGYRDRGAALALGAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACWCLIL
ATAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEPGEAWVSARARRADRWLTGLLAGLS
SSATVAAAVTVLAGAPRLCCLAFGTGTGALLLLRSRGGDGTRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLV
AAALYLGCAARTCSPVLSRAADLLEWLALAALVPLTCWIAGLYGTVRGLTLG
>Mature_451_residues
AVSTTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLGAGDGGAGRYRLSAAGAAALDPSTTLAHNHIGDGAILVLS
RIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVAGAAAAASFVTAGGLLLVRNTFSAGVVRDSGGTVAVLVSTTLLTL
GAAAVAHRGYRDRGAALALGAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACWCLILA
TAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEPGEAWVSARARRADRWLTGLLAGLSS
SATVAAAVTVLAGAPRLCCLAFGTGTGALLLLRSRGGDGTRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLVA
AALYLGCAARTCSPVLSRAADLLEWLALAALVPLTCWIAGLYGTVRGLTLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 44122; Mature: 43990

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSTTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLGAGDGGAGRYRLSAAGAAA
CCCCCCCEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
LDPSTTLAHNHIGDGAILVLSRIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVAGAA
CCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AAASFVTAGGLLLVRNTFSAGVVRDSGGTVAVLVSTTLLTLGAAAVAHRGYRDRGAALAL
HHHHHHHHCCEEEEECCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHH
GAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACWCLIL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ATAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEPGEAW
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHH
VSARARRADRWLTGLLAGLSSSATVAAAVTVLAGAPRLCCLAFGTGTGALLLLRSRGGDG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
TRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLVAAALYLGCAARTCSPVLSRA
CEEHEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADLLEWLALAALVPLTCWIAGLYGTVRGLTLG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AVSTTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLGAGDGGAGRYRLSAAGAAA
CCCCCCEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
LDPSTTLAHNHIGDGAILVLSRIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVAGAA
CCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AAASFVTAGGLLLVRNTFSAGVVRDSGGTVAVLVSTTLLTLGAAAVAHRGYRDRGAALAL
HHHHHHHHCCEEEEECCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHH
GAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACWCLIL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ATAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEPGEAW
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHH
VSARARRADRWLTGLLAGLSSSATVAAAVTVLAGAPRLCCLAFGTGTGALLLLRSRGGDG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
TRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLVAAALYLGCAARTCSPVLSRA
CEEHEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADLLEWLALAALVPLTCWIAGLYGTVRGLTLG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]