Click here to switch to the map view.

The map label for this gene is yobS [H]

Identifier: 41410237

GI number: 41410237

Start: 4616874

End: 4617506

Strand: Direct

Name: yobS [H]

Synonym: MAP4139

Alternate gene names: 41410237

Gene position: 4616874-4617506 (Clockwise)

Preceding gene: 41410234

Following gene: 41410238

Centisome position: 95.59

GC content: 72.35

Gene sequence:

>633_bases
ATGGCAGCTCAACCCGAACCGCCGACGGCGGCCGGGCGGCAGCGCGCGGGACGGCCCGCCGCCCGCCCGGCCAAGCTGAG
CCGCGAGGGGATCATCGACGGCGCGCTGACGTTCCTGGATCGCGAGGGCTGGGACGCGCTGACCATCAACGCCCTGGCCA
CCCAGCTGGGCACCAAGGGGCCGTCGCTGTACAACCACGTGGACAGCCTGGAGGACCTGCGCCGCGCCGTTCGGATCCGG
GTCATCGACGACATCATCACCATGCTCAACCGGGTCGGCGAGGGCCGCGCCCGCGACGACGCGGTGCTGGTCATGGCCGG
CGCCTACCGCAGCTACGCCCACCACCACCCCGGCCGCTACTCGGCCTTCACCCGGATGCCGCTGGGCGGTGACGATCCCG
AGTACACCGCCGCCACCCGCGGCGCGGCCGCGCCGGTGATCTCGGTGCTGTCCTCCTACGGGCTGGACGGCGAGGAGGCG
TTCCACGCCGCGCTGGAGTTCTGGTCCGCCCTGCACGGCTTCGTGCTGCTGGAGATGACCGGCGTGATGGACGACATCGA
CACCGACGCCTTGTTCTCCGACATGGTGCTGCGGCTGGCGGCGGGTCTGGAACGGCGGACCGCGCACGGCTAG

Upstream 100 bases:

>100_bases
CATTACGTGCAGATGCCCGCCGGAGGGCAGAGTTTCTTTTCCTTCGGCGCGCGTCAACTAGAGTCATTAGTTGATCCGTA
CCCGATCGAAGGGCGACCGC

Downstream 100 bases:

>100_bases
TTCGCCGCTTTGACCTGCGAGACCGGCGGCGGGTATTGTGGTTCCTCGTGCCTGGCGGCTTACGGCGCCTAACCGTAAGG
AAGTGAATGCCGGGCGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAAQPEPPTAAGRQRAGRPAARPAKLSREGIIDGALTFLDREGWDALTINALATQLGTKGPSLYNHVDSLEDLRRAVRIR
VIDDIITMLNRVGEGRARDDAVLVMAGAYRSYAHHHPGRYSAFTRMPLGGDDPEYTAATRGAAAPVISVLSSYGLDGEEA
FHAALEFWSALHGFVLLEMTGVMDDIDTDALFSDMVLRLAAGLERRTAHG

Sequences:

>Translated_210_residues
MAAQPEPPTAAGRQRAGRPAARPAKLSREGIIDGALTFLDREGWDALTINALATQLGTKGPSLYNHVDSLEDLRRAVRIR
VIDDIITMLNRVGEGRARDDAVLVMAGAYRSYAHHHPGRYSAFTRMPLGGDDPEYTAATRGAAAPVISVLSSYGLDGEEA
FHAALEFWSALHGFVLLEMTGVMDDIDTDALFSDMVLRLAAGLERRTAHG
>Mature_209_residues
AAQPEPPTAAGRQRAGRPAARPAKLSREGIIDGALTFLDREGWDALTINALATQLGTKGPSLYNHVDSLEDLRRAVRIRV
IDDIITMLNRVGEGRARDDAVLVMAGAYRSYAHHHPGRYSAFTRMPLGGDDPEYTAATRGAAAPVISVLSSYGLDGEEAF
HAALEFWSALHGFVLLEMTGVMDDIDTDALFSDMVLRLAAGLERRTAHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22684; Mature: 22553

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQPEPPTAAGRQRAGRPAARPAKLSREGIIDGALTFLDREGWDALTINALATQLGTKG
CCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
PSLYNHVDSLEDLRRAVRIRVIDDIITMLNRVGEGRARDDAVLVMAGAYRSYAHHHPGRY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHCCCCCC
SAFTRMPLGGDDPEYTAATRGAAAPVISVLSSYGLDGEEAFHAALEFWSALHGFVLLEMT
CCEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GVMDDIDTDALFSDMVLRLAAGLERRTAHG
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AAQPEPPTAAGRQRAGRPAARPAKLSREGIIDGALTFLDREGWDALTINALATQLGTKG
CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
PSLYNHVDSLEDLRRAVRIRVIDDIITMLNRVGEGRARDDAVLVMAGAYRSYAHHHPGRY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHCCCCCC
SAFTRMPLGGDDPEYTAATRGAAAPVISVLSSYGLDGEEAFHAALEFWSALHGFVLLEMT
CCEEECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GVMDDIDTDALFSDMVLRLAAGLERRTAHG
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]