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The map label for this gene is 41410065

Identifier: 41410065

GI number: 41410065

Start: 4427891

End: 4428307

Strand: Direct

Name: 41410065

Synonym: MAP3967

Alternate gene names: NA

Gene position: 4427891-4428307 (Clockwise)

Preceding gene: 41410064

Following gene: 41410066

Centisome position: 91.68

GC content: 63.79

Gene sequence:

>417_bases
GTGGCACCCGAGGAGAAGCTCTCCGCCAAGGTGTCCAACGCTGCCTCCGACATGGCCTCCGACATCGGCAGCTTCATCCG
CAGCCAGCGTGAACTCGCGCAGGTGTCGGTGCGGCAACTCGCCGAGAAGTCCGGGGTCAGCAATCCCTATCTCAGCCAGG
TGGAGCGTGGACTGCGCAAGCCATCGGCCGACGTCCTGAACCAGATCGCGAAGGCCCTCCGGGTTTCCGCCGAGGTTCTC
TATGTGCGCGCCGGGATCCTCGAGCCCAGCGACAAAAGTCAGGTGCGGGACGCGATCGTCACCGACACCGCGATCACCGA
GCGCCAAAAGCAGATCCTGCTCGACATCTACGCATCGTTCACCCAGCAAAACGAAGCCACCCATGAGGAGTGTCCGACCC
AGCCCGACAGCGAGTGA

Upstream 100 bases:

>100_bases
CGCAGCTGCTTTTCTAGCAGTGCTAACAAGTGCTTGCAATAGCAAGCACTTGTAGTAGTCTGAGGGCCGTCCAGACCGAC
CGTCCGACCAGGAGCACGCC

Downstream 100 bases:

>100_bases
TCAGTCCGTCGCCGGCGGGTCAGTGATGTATAGACGACCGGCCGCGGGGGTTACCCCACAGTAGGGATCTGGCGGTTCCA
GCCCTACTGCATGACGAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVL
YVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASFTQQNEATHEECPTQPDSE

Sequences:

>Translated_138_residues
MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVL
YVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASFTQQNEATHEECPTQPDSE
>Mature_137_residues
APEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVLY
VRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASFTQQNEATHEECPTQPDSE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15132; Mature: 15001

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQQNEATHEECPTQPDSE
HHHCCCHHHHCCCCCCCC
>Mature Secondary Structure 
APEEKLSAKVSNAASDMASDIGSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PSADVLNQIAKALRVSAEVLYVRAGILEPSDKSQVRDAIVTDTAITERQKQILLDIYASF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQQNEATHEECPTQPDSE
HHHCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]