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The map label for this gene is yagA [C]

Identifier: 41409768

GI number: 41409768

Start: 4078184

End: 4079173

Strand: Direct

Name: yagA [C]

Synonym: MAP3670

Alternate gene names: 41409768

Gene position: 4078184-4079173 (Clockwise)

Preceding gene: 41409767

Following gene: 41409769

Centisome position: 84.44

GC content: 63.54

Gene sequence:

>990_bases
ATGTCCCACCGTAATGCTCCATTGTCTGAAACCGGTCGGCTGCGGCTGGCCCGTTGCGTCGTTGATGAGGGTTGGTCGCT
GCGGCGAGCAGCCGAACGCTTCCAGGTCTCGGTAACCACCGCAGAGCGCTGGGCCAGGCGCTACCGCGAGCTGGGCGAGG
CCGGAATGGCCGACCGCAGCTCACGACCGCATCACAGCCCCAACCGCACGCCCACGCGCACCGAGCGGCGCATCATCAAA
GTCCGGGTGATCCGCCGGTGGGGACCAGCGCGCATCGGGTATCTGCTGGGGATACATCCCTCGACGGTCCATCGGGTATT
GACCCGCTACGCGCTGGCCAAACTGCGCTGGCTGGACCGATCTACTGGCCGGATTATCCGGCGGATGGAACCGGCTGGGT
GCGGGGATCTAGTGCACGTCGATGTCAAGAAGCTCGGCAAAATCCCTGCCGGCGGCGGCTGGCGGATGCTGGGACGCGCG
ATTGGCGGCCACAACTCCAACGCGGACAAGAGCAGCGGGGTGTTCAGCAAGCACCGCAACCCAATACGGGGATATCACTA
TCTCCACACCGCCATCGATGGATATTCCCGGCTGGCCTACAGCGAGGTACTCGACGATGAGATCAAAGAAACCGCCGCCG
AGTTCTGGACACGCGCTAATGCCTGGTTCGCCGAATGTGGGATCAGCGTGCGGAAAGTGTTGACCGACAACGGGTCCTGC
TACCGATCGCGCGTTTTTGCCCAGGCCCTGGGCGATATCGAACACCGCCGCACCCGACCCTACCGACCACAGACCAACGG
CAAGGTCGAGAGATTTCACCGCACCTTGGCAGACGAATGGGCCTACGCCCGCCTCTACCGCAGTGACACTGAGCGCTGCG
AAGAGTTCACCACCTGGCTGCACACCTACAATCACCACCGCGGCCACACCGCACTTGGCGGCCAACCACCCGCCAGCCGC
GTACCTAACCTCTCAGGTCAGTACACCTAA

Upstream 100 bases:

>100_bases
CTGACCACGGACGTTGGTGACGGCGTGGTGAGGTGACATGACGAGAACCTCCGAGTGAAGTGCGAGCTGCTTAGGAAACG
CACTCACCTCGGAGGTCCTC

Downstream 100 bases:

>100_bases
CGCTCTCGGCGCGCGCACGCCCCTTCGCGAGCGCCTGCCCTTCGCGAGCGCCTACCCCTCGGCGAGCGTCTGCCCCTCAG
CGAGCGCCTCTCTCGGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; Integrase Family Protein; Transposase For ISMyma; Integrase; Transposase For Tn; Integrase Catalytic Domain-Containing Protein; Insertion Element ISCmi2 Transposase; ISBm3 Transposase Programmed; Histidine Kinase; ISAca1 Transposase; Insertion Sequence Transposase Protein; Transposase ; Transposase Integrase Domain; Transposase Undefined; ISDvu4 Transposase; Insertion Element; Transposase Of; Transposase Integrase; LOW QUALITY PROTEIN Transposase ; ISBm3 Transposase Programmed Frameshift

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSHRNAPLSETGRLRLARCVVDEGWSLRRAAERFQVSVTTAERWARRYRELGEAGMADRSSRPHHSPNRTPTRTERRIIK
VRVIRRWGPARIGYLLGIHPSTVHRVLTRYALAKLRWLDRSTGRIIRRMEPAGCGDLVHVDVKKLGKIPAGGGWRMLGRA
IGGHNSNADKSSGVFSKHRNPIRGYHYLHTAIDGYSRLAYSEVLDDEIKETAAEFWTRANAWFAECGISVRKVLTDNGSC
YRSRVFAQALGDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYRSDTERCEEFTTWLHTYNHHRGHTALGGQPPASR
VPNLSGQYT

Sequences:

>Translated_329_residues
MSHRNAPLSETGRLRLARCVVDEGWSLRRAAERFQVSVTTAERWARRYRELGEAGMADRSSRPHHSPNRTPTRTERRIIK
VRVIRRWGPARIGYLLGIHPSTVHRVLTRYALAKLRWLDRSTGRIIRRMEPAGCGDLVHVDVKKLGKIPAGGGWRMLGRA
IGGHNSNADKSSGVFSKHRNPIRGYHYLHTAIDGYSRLAYSEVLDDEIKETAAEFWTRANAWFAECGISVRKVLTDNGSC
YRSRVFAQALGDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYRSDTERCEEFTTWLHTYNHHRGHTALGGQPPASR
VPNLSGQYT
>Mature_328_residues
SHRNAPLSETGRLRLARCVVDEGWSLRRAAERFQVSVTTAERWARRYRELGEAGMADRSSRPHHSPNRTPTRTERRIIKV
RVIRRWGPARIGYLLGIHPSTVHRVLTRYALAKLRWLDRSTGRIIRRMEPAGCGDLVHVDVKKLGKIPAGGGWRMLGRAI
GGHNSNADKSSGVFSKHRNPIRGYHYLHTAIDGYSRLAYSEVLDDEIKETAAEFWTRANAWFAECGISVRKVLTDNGSCY
RSRVFAQALGDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYRSDTERCEEFTTWLHTYNHHRGHTALGGQPPASRV
PNLSGQYT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37746; Mature: 37615

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHRNAPLSETGRLRLARCVVDEGWSLRRAAERFQVSVTTAERWARRYRELGEAGMADRS
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCCCC
SRPHHSPNRTPTRTERRIIKVRVIRRWGPARIGYLLGIHPSTVHRVLTRYALAKLRWLDR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHEECCHHHHHHHHHHHHHHHHHHHHH
STGRIIRRMEPAGCGDLVHVDVKKLGKIPAGGGWRMLGRAIGGHNSNADKSSGVFSKHRN
HHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCC
PIRGYHYLHTAIDGYSRLAYSEVLDDEIKETAAEFWTRANAWFAECGISVRKVLTDNGSC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHCCCHH
YRSRVFAQALGDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYRSDTERCEEFTTWL
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTYNHHRGHTALGGQPPASRVPNLSGQYT
HHHCCCCCCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
SHRNAPLSETGRLRLARCVVDEGWSLRRAAERFQVSVTTAERWARRYRELGEAGMADRS
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCCCC
SRPHHSPNRTPTRTERRIIKVRVIRRWGPARIGYLLGIHPSTVHRVLTRYALAKLRWLDR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHEECCHHHHHHHHHHHHHHHHHHHHH
STGRIIRRMEPAGCGDLVHVDVKKLGKIPAGGGWRMLGRAIGGHNSNADKSSGVFSKHRN
HHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCC
PIRGYHYLHTAIDGYSRLAYSEVLDDEIKETAAEFWTRANAWFAECGISVRKVLTDNGSC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHCCCHH
YRSRVFAQALGDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYRSDTERCEEFTTWL
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTYNHHRGHTALGGQPPASRVPNLSGQYT
HHHCCCCCCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA