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The map label for this gene is yfdE [H]

Identifier: 41409685

GI number: 41409685

Start: 3984633

End: 3985811

Strand: Direct

Name: yfdE [H]

Synonym: MAP3587

Alternate gene names: 41409685

Gene position: 3984633-3985811 (Clockwise)

Preceding gene: 41409683

Following gene: 41409686

Centisome position: 82.5

GC content: 72.6

Gene sequence:

>1179_bases
ATGGCGGGACCGGTGGAAGGCGTCACAGTCGTCGAACTCGGGGTCTGGGTGGCCGGGCCGGCCGCCGGCGGCATCCTGGC
CGACTGGGGCGCCGACGTGATCAAGATCGAGCCGCCGACCGGCGACCCGGCCCGCATGTTCGGCCGCATGCTGGGCTGCG
ACCTGGGGCTGAACCCGCCGTTCGAGATGGACAACCGGTCCAAGCGCAGCGTCGTGCTGGACCTGAGCAGCGAACCGGAC
CGCCGGGCGGCGTTCGAATTGCTTTCCGGCGCAGACGTTTTCCTGACCAACGTGCGGCCCGGGGCGCTGCAGCGGCTGGG
GCTGGACTTCGCGTCGGTGTCGGCGGCCAACCCCCGGCTGGTGTACGGGCTGATCACCGGGTACGGGGCGAGCGGGCCGG
ACGCCGACCGCGCCGCCTTCGACGTGGCCGCGTTCTGGTCCCGCGCCGGGGTGGCCCATCTGCTCACCCGGCCCGGCGAC
ACGCCCCCGTTCCAGCGCGGCGGCATGGGCGACCATTCGGCCGGGATGACGATGGCCGCGGCGGTGTGCGCGGCGCTGCT
GGCGCGCGAGCGCACCGGGGCCGGCCAACTGGTGACCACCTCGCTGTACCGGCAGGGCGCCTACACCGTCAGCTTCGACC
TGAACACCTACCTGATGAGCGGCCAGCCCATCGCGATCGGGCAACGCGAGTCGATGGGCAACCCGTGCATGAACAACTAC
GCCGCCTCCGACGGACGGCGGTTCTGGATCGTCGGGCTCGAGCCGGAGCGGCACTGGCCGGCGTTGTGCCGCGCCGTGGG
CCGCCCCGAGTGGCGCGACGATCCCCGCTTCGCCGACGCCCGCGCCCGCGCCGCCAACTCGGTGGCGCTGATCGCGGCGC
TGGACGAGATCTTCGCGACCCGCCCGCTCGACGAGTGGGCGCAGATCTTCGCCAACGAACCGGATTTCTTCTGGTCGCCG
GTCAACTCGCTGGAAGACGTGGTGGCCGACGAGCAGTTCCACGCCGCGGGCGGGATCGTTTACGTGCCCGACGGCGCCGA
CGACCAAGCCGCGGTGCCGATGGTGGCCACCCCGGCGGATTTCCACGGCACGCCGTGGGCACCGCGTTCTGCGGCACCGG
AACTCGGGCAGCACACCGCGGAGGTCCTCGCCGAGCTCAAGGCGCGCCGCGGCTCCTGA

Upstream 100 bases:

>100_bases
CATCGCACGCAAACCCCACTCGAGGCCACGCTAGCGTGACACTCGACACGCGGCGCCACGATGGCGTGACGCCCGAACGG
CAGAAGGCGGGAACTCACCC

Downstream 100 bases:

>100_bases
CCGGCCGCCGGGAGCTTTACAAATTTGCGCGGAAGTGTCACGCTGTGCGGTGAGTCGCATCGCCCGGACCGGCAAGCGGC
TCCAGCCCGTGCAAAGCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MAGPVEGVTVVELGVWVAGPAAGGILADWGADVIKIEPPTGDPARMFGRMLGCDLGLNPPFEMDNRSKRSVVLDLSSEPD
RRAAFELLSGADVFLTNVRPGALQRLGLDFASVSAANPRLVYGLITGYGASGPDADRAAFDVAAFWSRAGVAHLLTRPGD
TPPFQRGGMGDHSAGMTMAAAVCAALLARERTGAGQLVTTSLYRQGAYTVSFDLNTYLMSGQPIAIGQRESMGNPCMNNY
AASDGRRFWIVGLEPERHWPALCRAVGRPEWRDDPRFADARARAANSVALIAALDEIFATRPLDEWAQIFANEPDFFWSP
VNSLEDVVADEQFHAAGGIVYVPDGADDQAAVPMVATPADFHGTPWAPRSAAPELGQHTAEVLAELKARRGS

Sequences:

>Translated_392_residues
MAGPVEGVTVVELGVWVAGPAAGGILADWGADVIKIEPPTGDPARMFGRMLGCDLGLNPPFEMDNRSKRSVVLDLSSEPD
RRAAFELLSGADVFLTNVRPGALQRLGLDFASVSAANPRLVYGLITGYGASGPDADRAAFDVAAFWSRAGVAHLLTRPGD
TPPFQRGGMGDHSAGMTMAAAVCAALLARERTGAGQLVTTSLYRQGAYTVSFDLNTYLMSGQPIAIGQRESMGNPCMNNY
AASDGRRFWIVGLEPERHWPALCRAVGRPEWRDDPRFADARARAANSVALIAALDEIFATRPLDEWAQIFANEPDFFWSP
VNSLEDVVADEQFHAAGGIVYVPDGADDQAAVPMVATPADFHGTPWAPRSAAPELGQHTAEVLAELKARRGS
>Mature_391_residues
AGPVEGVTVVELGVWVAGPAAGGILADWGADVIKIEPPTGDPARMFGRMLGCDLGLNPPFEMDNRSKRSVVLDLSSEPDR
RAAFELLSGADVFLTNVRPGALQRLGLDFASVSAANPRLVYGLITGYGASGPDADRAAFDVAAFWSRAGVAHLLTRPGDT
PPFQRGGMGDHSAGMTMAAAVCAALLARERTGAGQLVTTSLYRQGAYTVSFDLNTYLMSGQPIAIGQRESMGNPCMNNYA
ASDGRRFWIVGLEPERHWPALCRAVGRPEWRDDPRFADARARAANSVALIAALDEIFATRPLDEWAQIFANEPDFFWSPV
NSLEDVVADEQFHAAGGIVYVPDGADDQAAVPMVATPADFHGTPWAPRSAAPELGQHTAEVLAELKARRGS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=392, Percent_Identity=28.0612244897959, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI300863124, Length=415, Percent_Identity=26.7469879518072, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI42794625, Length=401, Percent_Identity=27.1820448877805, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=27.1820448877805, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=24.220623501199, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI266458393, Length=272, Percent_Identity=28.6764705882353, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=28.8973384030418, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI300863126, Length=153, Percent_Identity=34.640522875817, Blast_Score=89, Evalue=9e-18,
Organism=Escherichia coli, GI87082093, Length=307, Percent_Identity=29.3159609120521, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788717, Length=409, Percent_Identity=28.8508557457213, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1786222, Length=218, Percent_Identity=27.5229357798165, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115535051, Length=331, Percent_Identity=27.190332326284, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=330, Percent_Identity=25.4545454545455, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=31.8181818181818, Blast_Score=166, Evalue=2e-41,
Organism=Drosophila melanogaster, GI24585488, Length=316, Percent_Identity=28.7974683544304, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41776; Mature: 41645

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPVEGVTVVELGVWVAGPAAGGILADWGADVIKIEPPTGDPARMFGRMLGCDLGLNPP
CCCCCCCEEEEEEEEEEECCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
FEMDNRSKRSVVLDLSSEPDRRAAFELLSGADVFLTNVRPGALQRLGLDFASVSAANPRL
CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHCCCCCCEE
VYGLITGYGASGPDADRAAFDVAAFWSRAGVAHLLTRPGDTPPFQRGGMGDHSAGMTMAA
EEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
AVCAALLARERTGAGQLVTTSLYRQGAYTVSFDLNTYLMSGQPIAIGQRESMGNPCMNNY
HHHHHHHHHHCCCCCCCEEHHHHHCCCEEEEEECEEEEECCCCEEECCHHCCCCCHHHCC
AASDGRRFWIVGLEPERHWPALCRAVGRPEWRDDPRFADARARAANSVALIAALDEIFAT
CCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHC
RPLDEWAQIFANEPDFFWSPVNSLEDVVADEQFHAAGGIVYVPDGADDQAAVPMVATPAD
CCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCCEEECCCC
FHGTPWAPRSAAPELGQHTAEVLAELKARRGS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGPVEGVTVVELGVWVAGPAAGGILADWGADVIKIEPPTGDPARMFGRMLGCDLGLNPP
CCCCCCEEEEEEEEEEECCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
FEMDNRSKRSVVLDLSSEPDRRAAFELLSGADVFLTNVRPGALQRLGLDFASVSAANPRL
CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHCCCCCCEE
VYGLITGYGASGPDADRAAFDVAAFWSRAGVAHLLTRPGDTPPFQRGGMGDHSAGMTMAA
EEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
AVCAALLARERTGAGQLVTTSLYRQGAYTVSFDLNTYLMSGQPIAIGQRESMGNPCMNNY
HHHHHHHHHHCCCCCCCEEHHHHHCCCEEEEEECEEEEECCCCEEECCHHCCCCCHHHCC
AASDGRRFWIVGLEPERHWPALCRAVGRPEWRDDPRFADARARAANSVALIAALDEIFAT
CCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHC
RPLDEWAQIFANEPDFFWSPVNSLEDVVADEQFHAAGGIVYVPDGADDQAAVPMVATPAD
CCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCCEEECCCC
FHGTPWAPRSAAPELGQHTAEVLAELKARRGS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]