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The map label for this gene is ymfC [H]

Identifier: 41409603

GI number: 41409603

Start: 3901415

End: 3902164

Strand: Reverse

Name: ymfC [H]

Synonym: MAP3505c

Alternate gene names: 41409603

Gene position: 3902164-3901415 (Counterclockwise)

Preceding gene: 41409604

Following gene: 41409602

Centisome position: 80.79

GC content: 69.6

Gene sequence:

>750_bases
ATGCCGCAGACCATCTCCGGCGACCACCGCTATCTGCAGATCGCGCGAGCGCTGCGCAAGGAGATCGTCGACGGGGTCTA
TCCGGTGGGGTCGCAGTTGCCGACCGAACACCAACTGTGCGAACGCTTCGCGGTGAGCCGCTACACCATCCGCGAAGCCC
TGCGCCGGCTGCGCGAGGACAACCTGGTCGCGTCCCGGCCGCGGGCGGGCACCCGGGTGGTTCCCCGCCCGGCGTCGAGT
TCCTATGCCCAGGACGCGATGTCGATCGACGACCTGCTCGCGTTCGCGGCCGGCGCGCAGCTGACCATCGAATCCAACGC
GATGGTGACGATCGACGACGAGCTGGCCGCCCGGACCGGACTCGAGCCCGGCACCCAGTGGCTGTCGGTGCGCGGCTACC
GGCAGGCCGACGGCGCCTCGGTGCCGATCTGCCGCACCGAGTACTACATCAACCGCAGCTTCGCCGCGGTCGGCCGGCTG
CTGCAACGGCATGCCGGGCCGATCTTTCCGTTGATCGAGGACCTGTTCGGTGTGAGCGTCGCCCAGTTGCACCAGGAGAT
CGCCGCGGTGCTGCTGTCGCCGGAACTCGCCGATGGTCTGGGCGCCGAGGCGGGGACGGCCGCGCTGCAGATGCGGCGCA
CCTACACCACCTCCGACGGCGAGGTGGCCCAGGTGACGATCAACACCCACCTGTCCCCGAACTTCCGGTACGCGATGACG
ATGCGCCGCGTCACCGGTCAGGCCGGTTGA

Upstream 100 bases:

>100_bases
CGTTCGCCGGGATCACCGCCGCGGCCGACGGGACACTGTACGTCTCGGCCGACGGCGAGGGCAGCGTGCTGGCGCTGCGG
CCGACCCGGGACGGCCACTG

Downstream 100 bases:

>100_bases
GATGACCGCCCGCACCGCCCCGGACGCCGCGCAAACATCGCTGGCCTACCGGCGCGGCTGGTGGGTGCGTAGCACACTGG
CCGACGCGGCGCGCGCCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPQTISGDHRYLQIARALRKEIVDGVYPVGSQLPTEHQLCERFAVSRYTIREALRRLREDNLVASRPRAGTRVVPRPASS
SYAQDAMSIDDLLAFAAGAQLTIESNAMVTIDDELAARTGLEPGTQWLSVRGYRQADGASVPICRTEYYINRSFAAVGRL
LQRHAGPIFPLIEDLFGVSVAQLHQEIAAVLLSPELADGLGAEAGTAALQMRRTYTTSDGEVAQVTINTHLSPNFRYAMT
MRRVTGQAG

Sequences:

>Translated_249_residues
MPQTISGDHRYLQIARALRKEIVDGVYPVGSQLPTEHQLCERFAVSRYTIREALRRLREDNLVASRPRAGTRVVPRPASS
SYAQDAMSIDDLLAFAAGAQLTIESNAMVTIDDELAARTGLEPGTQWLSVRGYRQADGASVPICRTEYYINRSFAAVGRL
LQRHAGPIFPLIEDLFGVSVAQLHQEIAAVLLSPELADGLGAEAGTAALQMRRTYTTSDGEVAQVTINTHLSPNFRYAMT
MRRVTGQAG
>Mature_248_residues
PQTISGDHRYLQIARALRKEIVDGVYPVGSQLPTEHQLCERFAVSRYTIREALRRLREDNLVASRPRAGTRVVPRPASSS
YAQDAMSIDDLLAFAAGAQLTIESNAMVTIDDELAARTGLEPGTQWLSVRGYRQADGASVPICRTEYYINRSFAAVGRLL
QRHAGPIFPLIEDLFGVSVAQLHQEIAAVLLSPELADGLGAEAGTAALQMRRTYTTSDGEVAQVTINTHLSPNFRYAMTM
RRVTGQAG

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27272; Mature: 27141

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQTISGDHRYLQIARALRKEIVDGVYPVGSQLPTEHQLCERFAVSRYTIREALRRLRED
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NLVASRPRAGTRVVPRPASSSYAQDAMSIDDLLAFAAGAQLTIESNAMVTIDDELAARTG
CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECHHHHHHCC
LEPGTQWLSVRGYRQADGASVPICRTEYYINRSFAAVGRLLQRHAGPIFPLIEDLFGVSV
CCCCCHHHEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
AQLHQEIAAVLLSPELADGLGAEAGTAALQMRRTYTTSDGEVAQVTINTHLSPNFRYAMT
HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHEECCCCCEEEEEEECCCCCCHHHHHH
MRRVTGQAG
HHHHHCCCC
>Mature Secondary Structure 
PQTISGDHRYLQIARALRKEIVDGVYPVGSQLPTEHQLCERFAVSRYTIREALRRLRED
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NLVASRPRAGTRVVPRPASSSYAQDAMSIDDLLAFAAGAQLTIESNAMVTIDDELAARTG
CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECHHHHHHCC
LEPGTQWLSVRGYRQADGASVPICRTEYYINRSFAAVGRLLQRHAGPIFPLIEDLFGVSV
CCCCCHHHEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
AQLHQEIAAVLLSPELADGLGAEAGTAALQMRRTYTTSDGEVAQVTINTHLSPNFRYAMT
HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHEECCCCCEEEEEEECCCCCCHHHHHH
MRRVTGQAG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]