| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is yfbK [C]
Identifier: 41409533
GI number: 41409533
Start: 3814766
End: 3815773
Strand: Reverse
Name: yfbK [C]
Synonym: MAP3435c
Alternate gene names: 41409533
Gene position: 3815773-3814766 (Counterclockwise)
Preceding gene: 41409534
Following gene: 41409529
Centisome position: 79.01
GC content: 70.34
Gene sequence:
>1008_bases ATGAAGTTGCCCCTGCTCGGGCCGGTGTCGGTGACCGGATTCCAGAACCCGTGGTTCTTCCTGGCGCTGCTGGCCGTGCT GCTGGTGATCGGCCTGTACGTGGTGCAGCAGTTCGCCCGGCGGCGCCGGGTGCTGCGGTTCGCCAACATGGAGGTGCTCG AGCGCGTCGCGCCGCCCCACCCGAGCCGGTGGCGGCACGTGCCCACCATCCTGCTGGCCACCTCGCTGGTACTGCTGACC ACCGCGATGGCCGGCCCGACGTCCGACGTCCGCATTCCGCTCAACCGCGCGGTGGTGATGCTGGTGATCGACGTGTCGGA GTCGATGGCCTCCACCGATGTGCCGCCCAACCGGCTGGCCGCGGCCAAGGAGGCCGGCAAGCAGTTCGCCGACCAGTTGA CGCCGGCCATCAATCTGGGGCTGGTCGAGTTCGCCGCCAACGCCACGCTGCTGGTGCCGCCGACGACCAACCGGGCCGCG GTCAAGGCGGGTATCGACAGTCTGCAGCCGGCGCCGAAAACCGCTACGGGAGAAGGCATTTTCACCGCGTTGCAGGCCAT CGCGACGGTCGGGTCGGTGATGGGCGGCGGCGAGGGCCCGCCACCGGCGCGGATCGTGCTGGAGTCCGACGGCGCCGAGA ACGTGCCGCTGGACCCGAACGCCCCGCAGGGGGCGTTCACCGCGGCCCGGGCCGCCAAGGCCGAGGGCGTGCAGATCTCC ACCATCTCCTTCGGCACCCCGTACGGCACCGTCGACTACGAGGGCGCCACCATCCCGGTGCCGGTGGACGACCAGACCCT GCAGAAGATCTGCGAGATCACCGACGGCCAGGCGTTCCACGCCGACAGCCTGGACTCGTTGAAGAACGTGTACTCGACGC TGCAGCGCCAGATCGGCTACGAGACCGTCAAGGGCGACGCCAGCATGGCGTGGATGCTGCTCGGCGCCGTCGTGCTGGCC GGCGCCGTGTTGGCCGGCCTGCTGCTGAACCGCCGGCTGCCCGCCTGA
Upstream 100 bases:
>100_bases AGACCAGGTCGCGTCGTCTGCGACCGCCGGTGTCATCGGCACCGCGGGTACGGGCGGCGGTCGATGCAACCGGCCCGTTT GACGCATAGTGTGGCTGGAC
Downstream 100 bases:
>100_bases CCAAGCGGTGCCGGCGCGCTAGGTGGGCAGGCGCCGGTTGATGAGCAACGCCAGCGCCGTCGCGATCAGGGCGGTCAGCA CGCCGAGCCGCAGCCAGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLT TAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAA VKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLA GAVLAGLLLNRRLPA
Sequences:
>Translated_335_residues MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLT TAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAA VKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLA GAVLAGLLLNRRLPA >Mature_335_residues MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLT TAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAA VKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLA GAVLAGLLLNRRLPA
Specific function: Unknown
COG id: COG2304
COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3435_MYCPA (Q73UD3)
Other databases:
- EMBL: AE016958 - RefSeq: NP_962369.1 - ProteinModelPortal: Q73UD3 - EnsemblBacteria: EBMYCT00000038400 - GeneID: 2720498 - GenomeReviews: AE016958_GR - KEGG: mpa:MAP3435c - NMPDR: fig|262316.1.peg.3435 - GeneTree: EBGT00050000017035 - HOGENOM: HBG480772 - OMA: IARPQAV - ProtClustDB: PRK13685 - HAMAP: MF_01340 - InterPro: IPR022933 - InterPro: IPR002035 - SMART: SM00327
Pfam domain/function: PF00092 VWA
EC number: NA
Molecular weight: Translated: 35316; Mature: 35316
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xf60eaec)-; HASH(0x126da434)-; HASH(0x1295b3e8)-;
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPH CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PSRWRHVPTILLATSLVLLTTAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECHHHHHCCCCCHHHHH AAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAAVKAGIDSLQPAPKTATGEGI HHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCCCHHHHHHCHHHCCCCCCCCCCHHH FTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGY EEECCCCCCCEECCCCEEECCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCC ETVKGDASMAWMLLGAVVLAGAVLAGLLLNRRLPA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH >Mature Secondary Structure MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPH CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PSRWRHVPTILLATSLVLLTTAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECHHHHHCCCCCHHHHH AAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAAVKAGIDSLQPAPKTATGEGI HHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCCCHHHHHHCHHHCCCCCCCCCCHHH FTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGY EEECCCCCCCEECCCCEEECCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCC ETVKGDASMAWMLLGAVVLAGAVLAGLLLNRRLPA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA