Definition Mycobacterium avium subsp. paratuberculosis K-10, complete genome.
Accession NC_002944
Length 4,829,781

Click here to switch to the map view.

The map label for this gene is yfbK [C]

Identifier: 41409533

GI number: 41409533

Start: 3814766

End: 3815773

Strand: Reverse

Name: yfbK [C]

Synonym: MAP3435c

Alternate gene names: 41409533

Gene position: 3815773-3814766 (Counterclockwise)

Preceding gene: 41409534

Following gene: 41409529

Centisome position: 79.01

GC content: 70.34

Gene sequence:

>1008_bases
ATGAAGTTGCCCCTGCTCGGGCCGGTGTCGGTGACCGGATTCCAGAACCCGTGGTTCTTCCTGGCGCTGCTGGCCGTGCT
GCTGGTGATCGGCCTGTACGTGGTGCAGCAGTTCGCCCGGCGGCGCCGGGTGCTGCGGTTCGCCAACATGGAGGTGCTCG
AGCGCGTCGCGCCGCCCCACCCGAGCCGGTGGCGGCACGTGCCCACCATCCTGCTGGCCACCTCGCTGGTACTGCTGACC
ACCGCGATGGCCGGCCCGACGTCCGACGTCCGCATTCCGCTCAACCGCGCGGTGGTGATGCTGGTGATCGACGTGTCGGA
GTCGATGGCCTCCACCGATGTGCCGCCCAACCGGCTGGCCGCGGCCAAGGAGGCCGGCAAGCAGTTCGCCGACCAGTTGA
CGCCGGCCATCAATCTGGGGCTGGTCGAGTTCGCCGCCAACGCCACGCTGCTGGTGCCGCCGACGACCAACCGGGCCGCG
GTCAAGGCGGGTATCGACAGTCTGCAGCCGGCGCCGAAAACCGCTACGGGAGAAGGCATTTTCACCGCGTTGCAGGCCAT
CGCGACGGTCGGGTCGGTGATGGGCGGCGGCGAGGGCCCGCCACCGGCGCGGATCGTGCTGGAGTCCGACGGCGCCGAGA
ACGTGCCGCTGGACCCGAACGCCCCGCAGGGGGCGTTCACCGCGGCCCGGGCCGCCAAGGCCGAGGGCGTGCAGATCTCC
ACCATCTCCTTCGGCACCCCGTACGGCACCGTCGACTACGAGGGCGCCACCATCCCGGTGCCGGTGGACGACCAGACCCT
GCAGAAGATCTGCGAGATCACCGACGGCCAGGCGTTCCACGCCGACAGCCTGGACTCGTTGAAGAACGTGTACTCGACGC
TGCAGCGCCAGATCGGCTACGAGACCGTCAAGGGCGACGCCAGCATGGCGTGGATGCTGCTCGGCGCCGTCGTGCTGGCC
GGCGCCGTGTTGGCCGGCCTGCTGCTGAACCGCCGGCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
AGACCAGGTCGCGTCGTCTGCGACCGCCGGTGTCATCGGCACCGCGGGTACGGGCGGCGGTCGATGCAACCGGCCCGTTT
GACGCATAGTGTGGCTGGAC

Downstream 100 bases:

>100_bases
CCAAGCGGTGCCGGCGCGCTAGGTGGGCAGGCGCCGGTTGATGAGCAACGCCAGCGCCGTCGCGATCAGGGCGGTCAGCA
CGCCGAGCCGCAGCCAGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLT
TAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAA
VKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS
TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLA
GAVLAGLLLNRRLPA

Sequences:

>Translated_335_residues
MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLT
TAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAA
VKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS
TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLA
GAVLAGLLLNRRLPA
>Mature_335_residues
MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPHPSRWRHVPTILLATSLVLLT
TAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLAAAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAA
VKAGIDSLQPAPKTATGEGIFTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS
TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGYETVKGDASMAWMLLGAVVLA
GAVLAGLLLNRRLPA

Specific function: Unknown

COG id: COG2304

COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3435_MYCPA (Q73UD3)

Other databases:

- EMBL:   AE016958
- RefSeq:   NP_962369.1
- ProteinModelPortal:   Q73UD3
- EnsemblBacteria:   EBMYCT00000038400
- GeneID:   2720498
- GenomeReviews:   AE016958_GR
- KEGG:   mpa:MAP3435c
- NMPDR:   fig|262316.1.peg.3435
- GeneTree:   EBGT00050000017035
- HOGENOM:   HBG480772
- OMA:   IARPQAV
- ProtClustDB:   PRK13685
- HAMAP:   MF_01340
- InterPro:   IPR022933
- InterPro:   IPR002035
- SMART:   SM00327

Pfam domain/function: PF00092 VWA

EC number: NA

Molecular weight: Translated: 35316; Mature: 35316

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf60eaec)-; HASH(0x126da434)-; HASH(0x1295b3e8)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPH
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSRWRHVPTILLATSLVLLTTAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECHHHHHCCCCCHHHHH
AAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAAVKAGIDSLQPAPKTATGEGI
HHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCCCHHHHHHCHHHCCCCCCCCCCHHH
FTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGY
EEECCCCCCCEECCCCEEECCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCC
ETVKGDASMAWMLLGAVVLAGAVLAGLLLNRRLPA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MKLPLLGPVSVTGFQNPWFFLALLAVLLVIGLYVVQQFARRRRVLRFANMEVLERVAPPH
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSRWRHVPTILLATSLVLLTTAMAGPTSDVRIPLNRAVVMLVIDVSESMASTDVPPNRLA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECHHHHHCCCCCHHHHH
AAKEAGKQFADQLTPAINLGLVEFAANATLLVPPTTNRAAVKAGIDSLQPAPKTATGEGI
HHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCCCHHHHHHCHHHCCCCCCCCCCHHH
FTALQAIATVGSVMGGGEGPPPARIVLESDGAENVPLDPNAPQGAFTAARAAKAEGVQIS
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
TISFGTPYGTVDYEGATIPVPVDDQTLQKICEITDGQAFHADSLDSLKNVYSTLQRQIGY
EEECCCCCCCEECCCCEEECCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCC
ETVKGDASMAWMLLGAVVLAGAVLAGLLLNRRLPA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA