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The map label for this gene is alkB [H]

Identifier: 41409462

GI number: 41409462

Start: 3737047

End: 3738390

Strand: Reverse

Name: alkB [H]

Synonym: MAP3364c

Alternate gene names: 41409462

Gene position: 3738390-3737047 (Counterclockwise)

Preceding gene: 41409463

Following gene: 41409461

Centisome position: 77.4

GC content: 66.89

Gene sequence:

>1344_bases
CTGGCTTTACAAACGGACACCTTTTGTCTAGACAGGAGACGTAGACGCCGGTATTGTCAACCTCCAACGTGGTGTGACTC
ACGAGGAGGTTTCCAAATGACCACCGTTGACCTGCAACAACCCTCGGATCCGGCCGCCTGGCGGGACAAAAAGCGCCGGC
TGTGGCTGATGGGGCTGATCGCGCCGACGGCGCTGTTCGTGATGCTGCCGCTGGTCTGGGCCCTGAACCGGCTGGGCTGG
CACGCCGCCGCCCAGGTGCCGCTGTGGATCGGGCCGATCCTGCTCTACGTCCTGTTGCCGATCCTCGACCTGCGCTTCGG
CCCCGACGGCCAGAACCCGCCCGACGAGGTGATGGAGCGGCTGGAGAACGACAAGTACTACCGCTACTGCACCTACGTCT
ACATCCCGTTCCAGTACCTGAGCGTGATCCTGGGCGCCTACCTGTTCACCGCCACCGACCTGAGCTGGCTGGGCTTCCAC
GGCGGCCTCGGCTGGGCGGGCAAGCTAGGGCTGGCGCTGTCGGTCGGCGTGCTCGGCGGCGTCGGCATCAACACCGCGCA
CGAGATGGGCCACAAGAAGGACTCGCTGGAGCGCTGGCTGTCCAAGATCACCCTGGCCCAGACCTGCTACGGCCACTTCT
ACATCGAGCACAACCGCGGCCACCACGTGCGGGTGGCCACGCCGGAGGACCCGGCGTCGGCCCGGTTCGGGGAGACCTTC
TGGGAGTTCTTGCCGCGCAGCGTGTTCGGCAGCCTGCGCTCCGCGCTGCGGCTGGAAGCCCAACGGCTGCGCCGGCTCGG
CAAGAACCCGTGGAACCCGCTCACCTACCCGTCCAACGACGTGCTCAACGCCTGGGCGATGTCAATCGTGTTGTGGGGCG
TGCTGATCGCGGTCTTCGGCCCGGGGCTCATCCCATTCGTGGTCATCCAGGCGGTGTTCGGCTTCAGCCTGCTCGAGGCG
GTCAACTACCTGGAGCACTACGGGCTGCTGCGGCGCAAGATCGACTCGCCTTCGGGGAAAGCGCGCTACGAGCGGTGCAC
GCCCGAGCACAGCTGGAACTCCGACCACGTCGTCACGAACCTGTTCCTCTACCACCTGCAGCGGCACAGCGATCACCACG
CCAACCCGACCCGGCGCTACCAGACGCTGCGCAGCCTGGACGGCTCGCCCAACCTGCCCAGCGGGTACGCGTCGATGATC
TCGCTCACCTACTTCCCGCCGCTGTGGCGCAAGGTGATGGACCATCGGGTGCTGGCCCACTACGGCGGCGACATCACCCG
GGTCAACGTGTCGCCGCGGCGGCGCGCCAAGCTGCTGGCCCGCTACCCGGCGGTGACGGCATGA

Upstream 100 bases:

>100_bases
AGGGCCGTCGCGACGCCGGCGAACCCGACCGCAGCGACGCGCTGGCGGCCGACCCCAACAGCCCGGTGCCGTAAAGCCAC
TTAAAGCCACTCAAAGCCAC

Downstream 100 bases:

>100_bases
CCCGCTACCGCTGCCCCGGCTGCGACTACATCTACGACGAGGCCAAAGGTGCTCCGCGGGAAGGCTTTCCGGCCGGGACT
TCGTTTGCCGACATCCCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MALQTDTFCLDRRRRRRYCQPPTWCDSRGGFQMTTVDLQQPSDPAAWRDKKRRLWLMGLIAPTALFVMLPLVWALNRLGW
HAAAQVPLWIGPILLYVLLPILDLRFGPDGQNPPDEVMERLENDKYYRYCTYVYIPFQYLSVILGAYLFTATDLSWLGFH
GGLGWAGKLGLALSVGVLGGVGINTAHEMGHKKDSLERWLSKITLAQTCYGHFYIEHNRGHHVRVATPEDPASARFGETF
WEFLPRSVFGSLRSALRLEAQRLRRLGKNPWNPLTYPSNDVLNAWAMSIVLWGVLIAVFGPGLIPFVVIQAVFGFSLLEA
VNYLEHYGLLRRKIDSPSGKARYERCTPEHSWNSDHVVTNLFLYHLQRHSDHHANPTRRYQTLRSLDGSPNLPSGYASMI
SLTYFPPLWRKVMDHRVLAHYGGDITRVNVSPRRRAKLLARYPAVTA

Sequences:

>Translated_447_residues
MALQTDTFCLDRRRRRRYCQPPTWCDSRGGFQMTTVDLQQPSDPAAWRDKKRRLWLMGLIAPTALFVMLPLVWALNRLGW
HAAAQVPLWIGPILLYVLLPILDLRFGPDGQNPPDEVMERLENDKYYRYCTYVYIPFQYLSVILGAYLFTATDLSWLGFH
GGLGWAGKLGLALSVGVLGGVGINTAHEMGHKKDSLERWLSKITLAQTCYGHFYIEHNRGHHVRVATPEDPASARFGETF
WEFLPRSVFGSLRSALRLEAQRLRRLGKNPWNPLTYPSNDVLNAWAMSIVLWGVLIAVFGPGLIPFVVIQAVFGFSLLEA
VNYLEHYGLLRRKIDSPSGKARYERCTPEHSWNSDHVVTNLFLYHLQRHSDHHANPTRRYQTLRSLDGSPNLPSGYASMI
SLTYFPPLWRKVMDHRVLAHYGGDITRVNVSPRRRAKLLARYPAVTA
>Mature_446_residues
ALQTDTFCLDRRRRRRYCQPPTWCDSRGGFQMTTVDLQQPSDPAAWRDKKRRLWLMGLIAPTALFVMLPLVWALNRLGWH
AAAQVPLWIGPILLYVLLPILDLRFGPDGQNPPDEVMERLENDKYYRYCTYVYIPFQYLSVILGAYLFTATDLSWLGFHG
GLGWAGKLGLALSVGVLGGVGINTAHEMGHKKDSLERWLSKITLAQTCYGHFYIEHNRGHHVRVATPEDPASARFGETFW
EFLPRSVFGSLRSALRLEAQRLRRLGKNPWNPLTYPSNDVLNAWAMSIVLWGVLIAVFGPGLIPFVVIQAVFGFSLLEAV
NYLEHYGLLRRKIDSPSGKARYERCTPEHSWNSDHVVTNLFLYHLQRHSDHHANPTRRYQTLRSLDGSPNLPSGYASMIS
LTYFPPLWRKVMDHRVLAHYGGDITRVNVSPRRRAKLLARYPAVTA

Specific function: Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases long-chain-length alkanes with at least 12 carbon atoms [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.15.3 [H]

Molecular weight: Translated: 51097; Mature: 50965

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALQTDTFCLDRRRRRRYCQPPTWCDSRGGFQMTTVDLQQPSDPAAWRDKKRRLWLMGLI
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
APTALFVMLPLVWALNRLGWHAAAQVPLWIGPILLYVLLPILDLRFGPDGQNPPDEVMER
HHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LENDKYYRYCTYVYIPFQYLSVILGAYLFTATDLSWLGFHGGLGWAGKLGLALSVGVLGG
HCCCCEEEEEEEEEECHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCC
VGINTAHEMGHKKDSLERWLSKITLAQTCYGHFYIEHNRGHHVRVATPEDPASARFGETF
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCCHHHHHHHH
WEFLPRSVFGSLRSALRLEAQRLRRLGKNPWNPLTYPSNDVLNAWAMSIVLWGVLIAVFG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
PGLIPFVVIQAVFGFSLLEAVNYLEHYGLLRRKIDSPSGKARYERCTPEHSWNSDHVVTN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHH
LFLYHLQRHSDHHANPTRRYQTLRSLDGSPNLPSGYASMISLTYFPPLWRKVMDHRVLAH
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
YGGDITRVNVSPRRRAKLLARYPAVTA
HCCCEEEECCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ALQTDTFCLDRRRRRRYCQPPTWCDSRGGFQMTTVDLQQPSDPAAWRDKKRRLWLMGLI
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
APTALFVMLPLVWALNRLGWHAAAQVPLWIGPILLYVLLPILDLRFGPDGQNPPDEVMER
HHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LENDKYYRYCTYVYIPFQYLSVILGAYLFTATDLSWLGFHGGLGWAGKLGLALSVGVLGG
HCCCCEEEEEEEEEECHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCC
VGINTAHEMGHKKDSLERWLSKITLAQTCYGHFYIEHNRGHHVRVATPEDPASARFGETF
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCCHHHHHHHH
WEFLPRSVFGSLRSALRLEAQRLRRLGKNPWNPLTYPSNDVLNAWAMSIVLWGVLIAVFG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
PGLIPFVVIQAVFGFSLLEAVNYLEHYGLLRRKIDSPSGKARYERCTPEHSWNSDHVVTN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHH
LFLYHLQRHSDHHANPTRRYQTLRSLDGSPNLPSGYASMISLTYFPPLWRKVMDHRVLAH
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
YGGDITRVNVSPRRRAKLLARYPAVTA
HCCCEEEECCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]