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The map label for this gene is 41409448

Identifier: 41409448

GI number: 41409448

Start: 3719034

End: 3719516

Strand: Reverse

Name: 41409448

Synonym: MAP3350c

Alternate gene names: NA

Gene position: 3719516-3719034 (Counterclockwise)

Preceding gene: 41409449

Following gene: 41409447

Centisome position: 77.01

GC content: 69.77

Gene sequence:

>483_bases
ATGGACGTCAAGGAGGTGCTGCTGCCCGGGGTCGGCCTTCGCTACGAGTTCACCGACCACAAGGGCGACCGCGTCGGCAT
CATCGCGCGGCGCAGCGGCGACTTCGACGTCGTCGTCTACGCGCGCGAGGATCCCGACGAGGCCCGGCCGGTGCTGCACC
TGTCCAACGAGGAGGCCGAGGCGGTGGCCCAGATCCTGGGCGCGCCGCGCATCGCCGAACGGTTCACCGAGCTGGCCAAG
GAAGTGCCCGGGCTGGAGACGGGCCAGGTGCACATCCTGGCCGGCAGCCCGTTCGTCGACCACCCGCTGGGCGACACCCG
GGCCCGCACCCGCACCGGGGCGTCCATCGTCGCCATCGTGCGCGACGACGAAGTGCTGGCCTCACCGGGTCCCTCCGAGA
TGTTGCATGCCCGCGACGTTCTGATCGTGATCGGCACCGAAGACGGTATCGCCGGCGTCGAGAAGATCATCGACAAGGGC
TGA

Upstream 100 bases:

>100_bases
TGGTCCCCCTGGGGCACCGGCCGCGCCGGCACCCGACCCAACCCGCCGGTCTGCCCTAGCGGGGTCGGCGCCGGCGAAAG
CGACCTGTCAGGATTGACGT

Downstream 100 bases:

>100_bases
GCCGGTGCAGATTTCGGGGACGCTGCTACTGCAACTCGGCGCCCTCCTGGCCACTCTGGCCGTATTGGGCGCCGCCGCGC
GCCGATTCGCGTTGTCGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: TrkA Domain-Containing Protein; TrkA-C Domain Protein; TrkA-C; TrkA Domain Protein; TrkA-C Domain Containing Protein; TrkA-Like Protein

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MDVKEVLLPGVGLRYEFTDHKGDRVGIIARRSGDFDVVVYAREDPDEARPVLHLSNEEAEAVAQILGAPRIAERFTELAK
EVPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIVRDDEVLASPGPSEMLHARDVLIVIGTEDGIAGVEKIIDKG

Sequences:

>Translated_160_residues
MDVKEVLLPGVGLRYEFTDHKGDRVGIIARRSGDFDVVVYAREDPDEARPVLHLSNEEAEAVAQILGAPRIAERFTELAK
EVPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIVRDDEVLASPGPSEMLHARDVLIVIGTEDGIAGVEKIIDKG
>Mature_160_residues
MDVKEVLLPGVGLRYEFTDHKGDRVGIIARRSGDFDVVVYAREDPDEARPVLHLSNEEAEAVAQILGAPRIAERFTELAK
EVPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIVRDDEVLASPGPSEMLHARDVLIVIGTEDGIAGVEKIIDKG

Specific function: Unknown

COG id: COG0490

COG function: function code P; Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17239; Mature: 17239

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVKEVLLPGVGLRYEFTDHKGDRVGIIARRSGDFDVVVYAREDPDEARPVLHLSNEEAE
CCHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCHHH
AVAQILGAPRIAERFTELAKEVPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIV
HHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
RDDEVLASPGPSEMLHARDVLIVIGTEDGIAGVEKIIDKG
ECCCEECCCCCHHHCCCCCEEEEEECCCCHHHHHHHHCCC
>Mature Secondary Structure
MDVKEVLLPGVGLRYEFTDHKGDRVGIIARRSGDFDVVVYAREDPDEARPVLHLSNEEAE
CCHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCHHH
AVAQILGAPRIAERFTELAKEVPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIV
HHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
RDDEVLASPGPSEMLHARDVLIVIGTEDGIAGVEKIIDKG
ECCCEECCCCCHHHCCCCCEEEEEECCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA