| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409425
Identifier: 41409425
GI number: 41409425
Start: 3695831
End: 3697015
Strand: Reverse
Name: 41409425
Synonym: MAP3327c
Alternate gene names: NA
Gene position: 3697015-3695831 (Counterclockwise)
Preceding gene: 41409426
Following gene: 41409424
Centisome position: 76.55
GC content: 66.75
Gene sequence:
>1185_bases ATGAGCGACTTCGACAACATCACCACCGCCGACGACGTCTTCAAGCTGGCCGCGCAGCGCACCGGCCTCAGCGAAATCGA CTCCGACTCTTGGCGAGAGGGCCTGGCGCTGATCGTCGACGAGGTCAACACCTCGCCGGTCTTCACGCCGTTCGGGCGCC AGCGAGTCCTCGACGACGCCACCAACGCGCTGGGCCGGCGCCTACAGGTGCACGCCTACATCCAGGACCACCCCGAGGTG CTCGACGCGCCGGTCGAGCGGCCGCTCATCGTGCTCGGCATGCCGCGCACCGGCACCACGGTCATCAGTTACCTGCTCGA CCAGGACCCGGCCCGGCGGTCGCTGCTGCACTGGCAGTGCGTGCATCCGATCCCGCCGGCGAGCACCGAGACGCTGCGCA CCGACCCGCGCTGCCTGGCCCTGCTGGACGAACAGCGCAAGATCCTGGATGCCGTGACGCGGGCGAAAATGCCGCTGCCG CACTGGGAAGACGCCGACGGCCCGACCGAGGACATGTTCATCCACAACCAGGACTTCAAGGGCCTGTCCTGGGATTCCTT CCTGCCCACGGACCGCTACGCGCGGTGGCTGTTCGACGAGGCCGACATGAGCAGCACGTACGAGTACCAGAAGCGATACC TGCAGGTGCTGCAGTCCACCGCCCCGGGCAGCTGGAGCCTGAAGATGCCGTCGCATTCGGTGCACATCGAGGCGCTGCTC AAGGTGTTCCCGGACGCCCGGCTGATCTGGGCCCACCGCGACCCGTACAAGGCGACCGGTTCGCTGTGCAACCTGTGGCG GCTGCCGCAGAGCCTGGTGATGAACACCGAGCTTCTCGATCAGACGGAGATGGGCCGGCTGGCGATGTGGCAGATGCGCT ACCACGTCGACCGGCCGCTGCGGGCCCGCGAGCGCATCGGCGACGAGCGCTTCTTCCACATGTACTACCACGAGATGATG CGCGACCCGATGGACGTCATGCGGCGCATCTACGAGTGGGCCGACGAGCCGTTGACCGCCGAAACCGAAGCGCGCATGCG CAATTGGCTCGCTCACCACCCGCAGGACCGGTTCGCGCTCAACGCCTATCGCCTCGACGAATACGGCCTGACCGTCGAAG CGCTCCAGCCGATCTTCGCCGAATACCTCGACACCTTCGACATCGAACTGGAAGGCACGCCGTGA
Upstream 100 bases:
>100_bases GACTGCGCCGGGGCCGCGCTGTTTTTGTGTACCGAGGCGGCGTCGTACATCACGGGCAGCACGATTGCGGTCGACGGCGG ATACCTGACGGTCTAGGGCC
Downstream 100 bases:
>100_bases AAGCATCCGTGGTCACCGGCCCGCGCCGGGTCGAGGTCGTCGACGTCGAGCGCCCCGACGTGGGCCCGCGCGACGTCCTG GTGCGGATGCGTGCCTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Hydrolase
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MSDFDNITTADDVFKLAAQRTGLSEIDSDSWREGLALIVDEVNTSPVFTPFGRQRVLDDATNALGRRLQVHAYIQDHPEV LDAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPIPPASTETLRTDPRCLALLDEQRKILDAVTRAKMPLP HWEDADGPTEDMFIHNQDFKGLSWDSFLPTDRYARWLFDEADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALL KVFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHEMM RDPMDVMRRIYEWADEPLTAETEARMRNWLAHHPQDRFALNAYRLDEYGLTVEALQPIFAEYLDTFDIELEGTP
Sequences:
>Translated_394_residues MSDFDNITTADDVFKLAAQRTGLSEIDSDSWREGLALIVDEVNTSPVFTPFGRQRVLDDATNALGRRLQVHAYIQDHPEV LDAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPIPPASTETLRTDPRCLALLDEQRKILDAVTRAKMPLP HWEDADGPTEDMFIHNQDFKGLSWDSFLPTDRYARWLFDEADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALL KVFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHEMM RDPMDVMRRIYEWADEPLTAETEARMRNWLAHHPQDRFALNAYRLDEYGLTVEALQPIFAEYLDTFDIELEGTP >Mature_393_residues SDFDNITTADDVFKLAAQRTGLSEIDSDSWREGLALIVDEVNTSPVFTPFGRQRVLDDATNALGRRLQVHAYIQDHPEVL DAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPIPPASTETLRTDPRCLALLDEQRKILDAVTRAKMPLPH WEDADGPTEDMFIHNQDFKGLSWDSFLPTDRYARWLFDEADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALLK VFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHEMMR DPMDVMRRIYEWADEPLTAETEARMRNWLAHHPQDRFALNAYRLDEYGLTVEALQPIFAEYLDTFDIELEGTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45922; Mature: 45790
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFDNITTADDVFKLAAQRTGLSEIDSDSWREGLALIVDEVNTSPVFTPFGRQRVLDDA CCCCCCCCCHHHHHHHHHHHCCCHHCCCHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH TNALGRRLQVHAYIQDHPEVLDAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQC HHHHCCEEEEEEEECCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHEEEE VHPIPPASTETLRTDPRCLALLDEQRKILDAVTRAKMPLPHWEDADGPTEDMFIHNQDFK CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC GLSWDSFLPTDRYARWLFDEADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALL CCCCCCCCCHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH KVFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMGRLAMWQMRYHVDRPL HHCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHCCHHHHHHHHHHCCCCH RARERIGDERFFHMYYHEMMRDPMDVMRRIYEWADEPLTAETEARMRNWLAHHPQDRFAL HHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEE NAYRLDEYGLTVEALQPIFAEYLDTFDIELEGTP EEEEEHHHCCCHHHHHHHHHHHHCCEEEEECCCC >Mature Secondary Structure SDFDNITTADDVFKLAAQRTGLSEIDSDSWREGLALIVDEVNTSPVFTPFGRQRVLDDA CCCCCCCCHHHHHHHHHHHCCCHHCCCHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH TNALGRRLQVHAYIQDHPEVLDAPVERPLIVLGMPRTGTTVISYLLDQDPARRSLLHWQC HHHHCCEEEEEEEECCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHEEEE VHPIPPASTETLRTDPRCLALLDEQRKILDAVTRAKMPLPHWEDADGPTEDMFIHNQDFK CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC GLSWDSFLPTDRYARWLFDEADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALL CCCCCCCCCHHHHHHHHHCHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH KVFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMGRLAMWQMRYHVDRPL HHCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHCCHHHHHHHHHHCCCCH RARERIGDERFFHMYYHEMMRDPMDVMRRIYEWADEPLTAETEARMRNWLAHHPQDRFAL HHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEE NAYRLDEYGLTVEALQPIFAEYLDTFDIELEGTP EEEEEHHHCCCHHHHHHHHHHHHCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA