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The map label for this gene is 41409342

Identifier: 41409342

GI number: 41409342

Start: 3599248

End: 3600447

Strand: Direct

Name: 41409342

Synonym: MAP3244

Alternate gene names: NA

Gene position: 3599248-3600447 (Clockwise)

Preceding gene: 41409341

Following gene: 41409343

Centisome position: 74.52

GC content: 70.5

Gene sequence:

>1200_bases
GTGGCGGGTCGTTTTCGCATTCGCCTGCGGGCGCCGCCGCGGTGTGAACGACTTCTCGGGTGGGTATCTGAGGCGAATGG
CCCCGGCCCGCAATTGCGTTGCGGCCGGCCGTTGCGGACAGCCGAGAAAACTGGAGGGTTCCGAATGCGGCTCCGTCGCA
GCGTGCTGAGCAAACCGGGGATCACCCGCAAACGGCGCGGTAAGGGATTCTCTTATCACGCGCCGGACGGCACCACGGTG
CGCGATCCCGAAACCCTGCAGCGCATCAAGGATCTGGTCATTCCGCCGGCGTGGAAGAAAGTGTGGATCTCGCCCCACCC
CAACGGCCACATCCAGGCCGTCGGCGTCGACGCGGCCGGTCGCCGCCAGTACCTGTACCACTGCGCGTGGCAGCAGGAAC
GCGCGGAGGAGAAGTTCGACCGGGTGCTGGAGCTGTCCACCGAGCTGCCGGCCTGGCGGGCCCGAATCGCCGAGGACCTG
GCCGCCCGGGGTTTGACCCGCGAGCGGGTGCTGGCGCTGGGGCTGCGGCTGCTCGATCGCGGCTACTTCCGTTCCGGCGG
CGAGCAGTACGCCGAGGAGAACGAGTCCTACGGGTTGTCCACCCTGCTGTGCGAGCACGTGACGGTCCGGCGTGACGCGG
TGGAGTTCGACTTCCCGGCCAAGAGCGGGGTCCGGCGCACCGTGCGGGTCGAGGATCGCGAAGTGGTCAGGGCGGTGCGT
CCGCTGATGCGACGGCGGCACCGCGGCGACCGGTTGTTGGTGTGCCGCACCGCATCCGGATGGTCGGAGGTGCGCGCCGA
CGACCTCAACGACCGGTTCAAGGAGCTGGTCGGCGACCAGTACACGGTCAAGGACTTGCGCACCTGGCACGGCACGGTGC
TGGCGGCGGCGGCGTTCGCCGAGGCCGATGCCGCGGTGTCGCGGCGGGTCGCCAGGCGGGTCGAGGCGGCGGTGATGAAA
GAGGTGGCCGAGGAGCTGGGCAACACCCCGGCGGTGGCGCGCGGCTCCTATGTGGACCCGCGGGTGATCACCGGGTATGA
GCGGGGACTGACCATCGGCGCGGCGACGCGGCGCGCGGGCCGCGCCCGCGACCCCGACGCCGCCCAGGAGATCCTGGACA
AGGCCACCCGGATGCTGATCCGGCGAGTGGCCAAGGGCCACAGCGCCTCCGGAGCATCCGTGCTGCCGAAATCGGCCTAG

Upstream 100 bases:

>100_bases
AACGGCAGTGCAATGTCACCGCGCTGCCGCCGTATCTGGAGTCGGCGTACCAGGAGTTCATGGCCGGCTGACGCCATCGG
AGACGACCCGCCACAACGCC

Downstream 100 bases:

>100_bases
CGCCGCCGGGCAGGTTTGTCCGCGCGGCCCGGCACCCGCGCGGGGCTGGCGGCCGGGCAAACCGGTTCGACACCGACAAC
CCTTCGTCAAATGTCCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerasei; -Like DNA poisomerase I; DNA poisomerase ; Type I DNA poisomerase; Eukaryotic-Like DNA poisomerase I

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MAGRFRIRLRAPPRCERLLGWVSEANGPGPQLRCGRPLRTAEKTGGFRMRLRRSVLSKPGITRKRRGKGFSYHAPDGTTV
RDPETLQRIKDLVIPPAWKKVWISPHPNGHIQAVGVDAAGRRQYLYHCAWQQERAEEKFDRVLELSTELPAWRARIAEDL
AARGLTRERVLALGLRLLDRGYFRSGGEQYAEENESYGLSTLLCEHVTVRRDAVEFDFPAKSGVRRTVRVEDREVVRAVR
PLMRRRHRGDRLLVCRTASGWSEVRADDLNDRFKELVGDQYTVKDLRTWHGTVLAAAAFAEADAAVSRRVARRVEAAVMK
EVAEELGNTPAVARGSYVDPRVITGYERGLTIGAATRRAGRARDPDAAQEILDKATRMLIRRVAKGHSASGASVLPKSA

Sequences:

>Translated_399_residues
MAGRFRIRLRAPPRCERLLGWVSEANGPGPQLRCGRPLRTAEKTGGFRMRLRRSVLSKPGITRKRRGKGFSYHAPDGTTV
RDPETLQRIKDLVIPPAWKKVWISPHPNGHIQAVGVDAAGRRQYLYHCAWQQERAEEKFDRVLELSTELPAWRARIAEDL
AARGLTRERVLALGLRLLDRGYFRSGGEQYAEENESYGLSTLLCEHVTVRRDAVEFDFPAKSGVRRTVRVEDREVVRAVR
PLMRRRHRGDRLLVCRTASGWSEVRADDLNDRFKELVGDQYTVKDLRTWHGTVLAAAAFAEADAAVSRRVARRVEAAVMK
EVAEELGNTPAVARGSYVDPRVITGYERGLTIGAATRRAGRARDPDAAQEILDKATRMLIRRVAKGHSASGASVLPKSA
>Mature_398_residues
AGRFRIRLRAPPRCERLLGWVSEANGPGPQLRCGRPLRTAEKTGGFRMRLRRSVLSKPGITRKRRGKGFSYHAPDGTTVR
DPETLQRIKDLVIPPAWKKVWISPHPNGHIQAVGVDAAGRRQYLYHCAWQQERAEEKFDRVLELSTELPAWRARIAEDLA
ARGLTRERVLALGLRLLDRGYFRSGGEQYAEENESYGLSTLLCEHVTVRRDAVEFDFPAKSGVRRTVRVEDREVVRAVRP
LMRRRHRGDRLLVCRTASGWSEVRADDLNDRFKELVGDQYTVKDLRTWHGTVLAAAAFAEADAAVSRRVARRVEAAVMKE
VAEELGNTPAVARGSYVDPRVITGYERGLTIGAATRRAGRARDPDAAQEILDKATRMLIRRVAKGHSASGASVLPKSA

Specific function: Unknown

COG id: COG3569

COG function: function code L; Topoisomerase IB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44796; Mature: 44665

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRFRIRLRAPPRCERLLGWVSEANGPGPQLRCGRPLRTAEKTGGFRMRLRRSVLSKPG
CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC
ITRKRRGKGFSYHAPDGTTVRDPETLQRIKDLVIPPAWKKVWISPHPNGHIQAVGVDAAG
CCHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCC
RRQYLYHCAWQQERAEEKFDRVLELSTELPAWRARIAEDLAARGLTRERVLALGLRLLDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GYFRSGGEQYAEENESYGLSTLLCEHVTVRRDAVEFDFPAKSGVRRTVRVEDREVVRAVR
HHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH
PLMRRRHRGDRLLVCRTASGWSEVRADDLNDRFKELVGDQYTVKDLRTWHGTVLAAAAFA
HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHH
EADAAVSRRVARRVEAAVMKEVAEELGNTPAVARGSYVDPRVITGYERGLTIGAATRRAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHCCEEEEHHHHHCC
RARDPDAAQEILDKATRMLIRRVAKGHSASGASVLPKSA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGRFRIRLRAPPRCERLLGWVSEANGPGPQLRCGRPLRTAEKTGGFRMRLRRSVLSKPG
CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC
ITRKRRGKGFSYHAPDGTTVRDPETLQRIKDLVIPPAWKKVWISPHPNGHIQAVGVDAAG
CCHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCC
RRQYLYHCAWQQERAEEKFDRVLELSTELPAWRARIAEDLAARGLTRERVLALGLRLLDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GYFRSGGEQYAEENESYGLSTLLCEHVTVRRDAVEFDFPAKSGVRRTVRVEDREVVRAVR
HHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH
PLMRRRHRGDRLLVCRTASGWSEVRADDLNDRFKELVGDQYTVKDLRTWHGTVLAAAAFA
HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHH
EADAAVSRRVARRVEAAVMKEVAEELGNTPAVARGSYVDPRVITGYERGLTIGAATRRAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHCCEEEEHHHHHCC
RARDPDAAQEILDKATRMLIRRVAKGHSASGASVLPKSA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA