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The map label for this gene is ydeS [H]

Identifier: 41409321

GI number: 41409321

Start: 3575647

End: 3576291

Strand: Reverse

Name: ydeS [H]

Synonym: MAP3223c

Alternate gene names: 41409321

Gene position: 3576291-3575647 (Counterclockwise)

Preceding gene: 41409324

Following gene: 41409320

Centisome position: 74.05

GC content: 69.3

Gene sequence:

>645_bases
TTGAGACTTTTTCGCGGCAATTACGATACGGTAGGTAGCGTTATGAAAGCAGACCCGTCCGGCCTTGACAAGGCCCCCGG
CGCCGGCCGCCCCCGCGATCCGCGCATCGACTCGGCCATCCTATCGGCGACCGCGGAACTGCTTGTCCAAACGGGCTATT
CGAATATCAGTCTGGCGGCGGTCGCCGAGCGTGCCGGCACCACCAAATCGGCGCTGTACCGGCGCTGGTCGAGCAAGGCC
GAACTGGTGCACGAGGCGGCCTTCCCGACGGCCCCGACCGCGCTGGAGGCGCCGGCCGGTGACATCGCCGCCGACATGCG
GATGATGATCGAGGCCACGCGCGACGTGTTCACCACGCCCGTGGTGCGCGCCGCGCTGCCCGGCCTGGTGGCCGACATGA
CGGCCGATCCCGCGCTCAACGCCCGGGTGATGTCGCGGTTCGCGGACCTGTTCACCGCGGTGCGGGTGCGGTTGCGCGAG
GCGGTGGACCGCGGCGAGGCGCATCGCGACGTGGATCCGGACCGGTTGATCGAGTTGATCGGGGGAGCGACGATGCTGCG
GATGCTGCTGCGCCCGGAGGAGGAACTCGACGACGCGTGGGTGGAGCAGACGACGGCGATCGTGGTGCACGGGGTGCGGC
GGTGA

Upstream 100 bases:

>100_bases
GTGACATCACCGCCGGCACGGTGGTGACGTCACGGCTCGAGCGCTGCAGCCGGTCGACGCTGTCGACCGCCGGTTCTGTA
GCCACGGGTGCCTCCATTCC

Downstream 100 bases:

>100_bases
CGGGGCGGCTGACCGGCCGCGCCGCGATCGTCACCGGCGCCAGCCGCGGCCTGGGCCGGGCCATCGCGCTGGCCCTGGCG
AGCGAGGGCGCCGCGGTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MRLFRGNYDTVGSVMKADPSGLDKAPGAGRPRDPRIDSAILSATAELLVQTGYSNISLAAVAERAGTTKSALYRRWSSKA
ELVHEAAFPTAPTALEAPAGDIAADMRMMIEATRDVFTTPVVRAALPGLVADMTADPALNARVMSRFADLFTAVRVRLRE
AVDRGEAHRDVDPDRLIELIGGATMLRMLLRPEEELDDAWVEQTTAIVVHGVRR

Sequences:

>Translated_214_residues
MRLFRGNYDTVGSVMKADPSGLDKAPGAGRPRDPRIDSAILSATAELLVQTGYSNISLAAVAERAGTTKSALYRRWSSKA
ELVHEAAFPTAPTALEAPAGDIAADMRMMIEATRDVFTTPVVRAALPGLVADMTADPALNARVMSRFADLFTAVRVRLRE
AVDRGEAHRDVDPDRLIELIGGATMLRMLLRPEEELDDAWVEQTTAIVVHGVRR
>Mature_214_residues
MRLFRGNYDTVGSVMKADPSGLDKAPGAGRPRDPRIDSAILSATAELLVQTGYSNISLAAVAERAGTTKSALYRRWSSKA
ELVHEAAFPTAPTALEAPAGDIAADMRMMIEATRDVFTTPVVRAALPGLVADMTADPALNARVMSRFADLFTAVRVRLRE
AVDRGEAHRDVDPDRLIELIGGATMLRMLLRPEEELDDAWVEQTTAIVVHGVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23211; Mature: 23211

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFRGNYDTVGSVMKADPSGLDKAPGAGRPRDPRIDSAILSATAELLVQTGYSNISLAA
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
VAERAGTTKSALYRRWSSKAELVHEAAFPTAPTALEAPAGDIAADMRMMIEATRDVFTTP
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VVRAALPGLVADMTADPALNARVMSRFADLFTAVRVRLREAVDRGEAHRDVDPDRLIELI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
GGATMLRMLLRPEEELDDAWVEQTTAIVVHGVRR
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLFRGNYDTVGSVMKADPSGLDKAPGAGRPRDPRIDSAILSATAELLVQTGYSNISLAA
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
VAERAGTTKSALYRRWSSKAELVHEAAFPTAPTALEAPAGDIAADMRMMIEATRDVFTTP
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VVRAALPGLVADMTADPALNARVMSRFADLFTAVRVRLREAVDRGEAHRDVDPDRLIELI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
GGATMLRMLLRPEEELDDAWVEQTTAIVVHGVRR
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]