| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409318
Identifier: 41409318
GI number: 41409318
Start: 3571562
End: 3572515
Strand: Reverse
Name: 41409318
Synonym: MAP3220c
Alternate gene names: NA
Gene position: 3572515-3571562 (Counterclockwise)
Preceding gene: 41409320
Following gene: 41409317
Centisome position: 73.97
GC content: 75.16
Gene sequence:
>954_bases ATGCCCGGGATGGACAAGCCGACGGGGCGGGTCGTCGCCCTGATCGTTCTGTTGCTCGTGGTCGCCGCCCTGCGCGGGTA CCTGCCCGCCCAACACGACGCGACGCGCAGCGAGGCGGGCGGCCGGGCGGCGCTGGGCCTGGTGGTGGCCATCCTCGCGG TGACGCTGGCGCTGATCGCGGTCGCGATCGTCGCGCGGTTGAAGGACCCGCGGGCGCCGGCTCCGCCCGCCGGCGCGCTG TCGGAGACGCTGGGCGCCGGCAGGGGCCGCCCGACCTGGCGGGTGTTGCTGATCGGGCTCGGCGTGATCGTGGCCTGGCT GCTGATCGTGATGCTGCTGGCCCGGCTGTTCGCGTCGCACGGGCTCTCGCCCGCCCCGCCGCCCGGCACCGGTGCGTCGC CGCCACCGCACCCGGCGGCACCCCCGGCGCCGCCGCCGCAGCACCCGCAGCGCCCGCGCGACGGGTCGCAGGACACGTTG GGCATCCTGCTCGCCGGCACGGTCGCGATGCTGTTGATGGTCGTCGCCTCAGCGGTGGCCGGCGCGCGGCGCCGGTGGCG GTCGCCGGCGCCGGCCGTCCCCGACGAACCGGCCGAAAACCCGGCGCCGCAACCACATTCGGAGTCGCTGGCGCGTGCGG CCGAACGCGGGTTGGCCGAGATGGCCGACCTGCGCCGCGACCCGCGCGAGGCCATCATCGCCTGCTACGCCGCGATGGAA CGCGAACTGGCGCACGTTCCCGGCGCCGTGCCGCAGGACTTCGACACCCCCAGCGAGGTGCTGGCCCGCGCGGTGGAACA CCATGCGCTGCACGCCGACAACGCCGTCCAGCTGGTGAACCTGTTCACCGAGGCGCGGTTCAGCCCGCACGTGATGAACG AGGGCCACCGCGACGTGGCGGTGCGGGTGTTGCGGCTGGTGCTCGACGAACTGGGGAGCCGGAGTGTCGCATGA
Upstream 100 bases:
>100_bases AAGCGGTGCGGGCGGTTCTGGCCCCGGGACCGCCTGACGTGCAAGTATGGGCAAAGCCAGTGCCGCACCAGCGGCAGGCA ACCGGTCGAGTGGTGTGCCG
Downstream 100 bases:
>100_bases AAAAGACTGTGGCCCTGGGTCTTTGCTTGATCATCGGGATCGAGCTGCTGGCGCTGACCCAGCACGACCGCCGGCTGGTG CTGACGGCCTCCGGCGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MPGMDKPTGRVVALIVLLLVVAALRGYLPAQHDATRSEAGGRAALGLVVAILAVTLALIAVAIVARLKDPRAPAPPAGAL SETLGAGRGRPTWRVLLIGLGVIVAWLLIVMLLARLFASHGLSPAPPPGTGASPPPHPAAPPAPPPQHPQRPRDGSQDTL GILLAGTVAMLLMVVASAVAGARRRWRSPAPAVPDEPAENPAPQPHSESLARAAERGLAEMADLRRDPREAIIACYAAME RELAHVPGAVPQDFDTPSEVLARAVEHHALHADNAVQLVNLFTEARFSPHVMNEGHRDVAVRVLRLVLDELGSRSVA
Sequences:
>Translated_317_residues MPGMDKPTGRVVALIVLLLVVAALRGYLPAQHDATRSEAGGRAALGLVVAILAVTLALIAVAIVARLKDPRAPAPPAGAL SETLGAGRGRPTWRVLLIGLGVIVAWLLIVMLLARLFASHGLSPAPPPGTGASPPPHPAAPPAPPPQHPQRPRDGSQDTL GILLAGTVAMLLMVVASAVAGARRRWRSPAPAVPDEPAENPAPQPHSESLARAAERGLAEMADLRRDPREAIIACYAAME RELAHVPGAVPQDFDTPSEVLARAVEHHALHADNAVQLVNLFTEARFSPHVMNEGHRDVAVRVLRLVLDELGSRSVA >Mature_316_residues PGMDKPTGRVVALIVLLLVVAALRGYLPAQHDATRSEAGGRAALGLVVAILAVTLALIAVAIVARLKDPRAPAPPAGALS ETLGAGRGRPTWRVLLIGLGVIVAWLLIVMLLARLFASHGLSPAPPPGTGASPPPHPAAPPAPPPQHPQRPRDGSQDTLG ILLAGTVAMLLMVVASAVAGARRRWRSPAPAVPDEPAENPAPQPHSESLARAAERGLAEMADLRRDPREAIIACYAAMER ELAHVPGAVPQDFDTPSEVLARAVEHHALHADNAVQLVNLFTEARFSPHVMNEGHRDVAVRVLRLVLDELGSRSVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33222; Mature: 33091
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGMDKPTGRVVALIVLLLVVAALRGYLPAQHDATRSEAGGRAALGLVVAILAVTLALIA CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH VAIVARLKDPRAPAPPAGALSETLGAGRGRPTWRVLLIGLGVIVAWLLIVMLLARLFASH HHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLSPAPPPGTGASPPPHPAAPPAPPPQHPQRPRDGSQDTLGILLAGTVAMLLMVVASAVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GARRRWRSPAPAVPDEPAENPAPQPHSESLARAAERGLAEMADLRRDPREAIIACYAAME HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH RELAHVPGAVPQDFDTPSEVLARAVEHHALHADNAVQLVNLFTEARFSPHVMNEGHRDVA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCHHHHH VRVLRLVLDELGSRSVA HHHHHHHHHHHCCCCCC >Mature Secondary Structure PGMDKPTGRVVALIVLLLVVAALRGYLPAQHDATRSEAGGRAALGLVVAILAVTLALIA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH VAIVARLKDPRAPAPPAGALSETLGAGRGRPTWRVLLIGLGVIVAWLLIVMLLARLFASH HHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLSPAPPPGTGASPPPHPAAPPAPPPQHPQRPRDGSQDTLGILLAGTVAMLLMVVASAVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GARRRWRSPAPAVPDEPAENPAPQPHSESLARAAERGLAEMADLRRDPREAIIACYAAME HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH RELAHVPGAVPQDFDTPSEVLARAVEHHALHADNAVQLVNLFTEARFSPHVMNEGHRDVA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCHHHHH VRVLRLVLDELGSRSVA HHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA