| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409211
Identifier: 41409211
GI number: 41409211
Start: 3460764
End: 3461966
Strand: Reverse
Name: 41409211
Synonym: MAP3113c
Alternate gene names: NA
Gene position: 3461966-3460764 (Counterclockwise)
Preceding gene: 41409213
Following gene: 41409210
Centisome position: 71.68
GC content: 72.4
Gene sequence:
>1203_bases GTGTGCATGGCGCATTTCGAGAAGGACGCGATCCTGTCCGGCATCGGGATCTCCCGGATCGGACGCCGCACCGGCATACC GGGCCTGGAGCTGACCATGGAGGCGGTCCGGGCCGCCGTCGCCGACGCCGGCCTGGCCCCGACCGACATCGACGGCATCG CCACCCTGGGCGACACGCTCGCCGCCGACGTCAACGCCCAGCTGGGCATCGACGCCGCCGACTGCGGCTCCGGGTTCGGC ACCGGCGGGTTGCTCTCCCCGGTGATGTCGGCCTGCCGCGCCGTGGCCGAACGCCGCGCCCGCCACGTGGTCGTCTACCG GACCATCCAGATGCTCGGCGGCACCGTCCCGGTCAAGCAGGAACCCAACGCGGCGGCCCCGCCGCTGGCCCGGATGTTCG AGACCCCCGAGGGCGAGCCCAAGCCCGCCGTCGGTGCGATGGACGACGTCAACGATCTGGTCGCCGCGCACGACTACTCC GCCGCCAACTGGCTGGCGCTGAACTGCCGCCGCCACATGCAGCTGTACGGCACCCGCAAGGAACAGCTGGGCTGGGTGGC CCTCAACGGCAGGCGCAACGCCGCACTGAATCCCCTTGCGGTGTACCGCGATCCGATGACCATGGCCGACTACCTGGGTG CTCGGCTGGTGTCCACCCCGCTGGGGCTGCTGGACTGCGACGTCCCGATCGACGGCTCGATCGCCGTGGTGGTCTCGCAT CTCGAGTACGCGCCCGACTGCCCGCACCGCGCGGTGCAGGTGGAGGCGATCGGCGGCTCCGACGGCGCCGGCGGCTGGTT CCACCGCGCCGACTACCCGAAGATGGCGATGTCGGACGCGGCGGCGCAGATGTGGTCGCGCACCGACCTGACGGCCGCCG ACCTCGACGTCGCCCAGTTGTACGACGGGTTCACCTTTCTCACCCTGGCCTGGCTGGAAGCCCTCGGGGTCTGCGGCGAC GGCGAAGCCGGACCGTTCGTGGAGGGCGGGGCGCGCATCGCCCGCGACGGCGAGCTGCCGTTGAACACCTACGGCGGTCA ACTCTCCGCGGGGCGCATGCACGGCTATTGGGCGCTGCACGAGGGGTGCCTGCAGTTGCGCGGCGACGCGGGGGAGCGGC AGGTGGCGCGCCGCCCGCAGGTGGGCGTGGTGTCCGTCGGCGGCGGGCCCGTCGCGGGATGCATGCTGCTCACCTGCCGG TAG
Upstream 100 bases:
>100_bases GCGCAGCCGTCGCAGTACTCGATGCGCAGCGGCCCGTCCGACACGACGAATACAGTACACTCAATTGGTTCGACGCGGCG ACGGTGTGGTCTGACGGGCG
Downstream 100 bases:
>100_bases GGCGATCGATGAACGCGGAGCCCAGAACCGGTCCGGCGAAAACGCTCGCGTCGGCCCTCGCCCGGGACATCGAAGCCGAG ATCGTCCGGCGCGGGTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTLAADVNAQLGIDAADCGSGFG TGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQEPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYS AANWLALNCRRHMQLYGTRKEQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQLYDGFTFLTLAWLEALGVCGD GEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALHEGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR
Sequences:
>Translated_400_residues MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTLAADVNAQLGIDAADCGSGFG TGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQEPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYS AANWLALNCRRHMQLYGTRKEQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQLYDGFTFLTLAWLEALGVCGD GEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALHEGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR >Mature_400_residues MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTLAADVNAQLGIDAADCGSGFG TGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQEPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYS AANWLALNCRRHMQLYGTRKEQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQLYDGFTFLTLAWLEALGVCGD GEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALHEGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI302344767, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI19923233, Length=215, Percent_Identity=28.3720930232558, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI302344760, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI302344762, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI55956775, Length=189, Percent_Identity=25.3968253968254, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17537653, Length=216, Percent_Identity=26.8518518518519, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI19921506, Length=384, Percent_Identity=26.0416666666667, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI24585051, Length=217, Percent_Identity=30.8755760368664, Blast_Score=88, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002155 - InterPro: IPR016039 - InterPro: IPR016038 - InterPro: IPR020617 - InterPro: IPR020616 [H]
Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]
EC number: NA
Molecular weight: Translated: 42095; Mature: 42095
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTL CCCCCCCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH AADVNAQLGIDAADCGSGFGTGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQ HHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHCCCCCCCC EPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYSAANWLALNCRRHMQLYGTRK CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCHH EQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH HHCCEEEECCCCCCCCCCHHEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEH LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQL HHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCHHHHH YDGFTFLTLAWLEALGVCGDGEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALH HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHH EGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR HHHHHHCCCCCHHHHHCCCCCCEEEECCCCEEEEEEEECC >Mature Secondary Structure MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTL CCCCCCCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH AADVNAQLGIDAADCGSGFGTGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQ HHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHCCCCCCCC EPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYSAANWLALNCRRHMQLYGTRK CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCHH EQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH HHCCEEEECCCCCCCCCCHHEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEH LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQL HHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCHHHHH YDGFTFLTLAWLEALGVCGDGEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALH HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHH EGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR HHHHHHCCCCCHHHHHCCCCCCEEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]