| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41409109
Identifier: 41409109
GI number: 41409109
Start: 3349667
End: 3350437
Strand: Reverse
Name: 41409109
Synonym: MAP3011c
Alternate gene names: NA
Gene position: 3350437-3349667 (Counterclockwise)
Preceding gene: 41409110
Following gene: 41409108
Centisome position: 69.37
GC content: 72.63
Gene sequence:
>771_bases GTGCGCGGGGTGGTTGCGCGCGCCGAAAACACCGCCGGTCCAGCCCGCGCCGAAACCCGGCGTGGCTCTCCGGTGGACGT ACGACGGTGGGTTTTGAGGCTGCGCCGAATGGCGACGGCCTACGCGGTGGTGGCGGCCCTGGGCAGTCTCGCCATCGGTA GCGAGTCGGTCAATTGCCCGACGGCGGTGGGCGGGCAGTCCGACATCGGCCAGGGCGGCCCCGGCCCGAGAGCATCGCGA GCCCCTCGGGCCGCGCCGACGTGGTGGTGGCCGCCCGCGGAGCCCCGTCCCGCGGTGCACGAGGTGGCCGCCGTGCGTGG CGGTATCCAGCTGCGCCAGGTCGCGTTCGACGGGCGCGGAGCGTGGGCGGACGGCCCCGAGGCGATCCGCGGCTACCTCG AGGAGGCGCTGACCCGGATCGGGGTCACCGACGCGTCGGCCCGCGGCCGCTGGATCGACGGCATGATGACGATCGCCGAC CACGAATCCCAGTTTCACTCGGCGGCGATCAACCTGGCCGACAGCAACGCGTATGGGCCGGCCCAGCTCGACGGCGGCCC ACTGCACGCCACGCGGGGCCCGTGGCAGCTGATGCCGGACACGTTCGCGGCCTTCCACCAGCCGGGGACGTCGAATTCGG CGTGGGATCCGGTGGCCGCCGCGTGCGCGTCGATGAACTATCAGATGAGCCGCTACGGCGTCAGCCCCGACGGCAGCAAT CAGCGGCTGCTGGTGGGGCAGGCCAATCCCGGTATCCGGCAGGGTTATTAG
Upstream 100 bases:
>100_bases GGACGGCGCGCCGGTTGGACTGAAGTCTTCTTCCCGGCGGTGCCGGCCCGCGCGGAGCTGCGGATGAGGCTGGGAAGCAA ATATCGGCAGTTCGAGGGGA
Downstream 100 bases:
>100_bases CCGCGCCCGCGGTACCCGATCTTCCTCACCGGCGGGGAGTAACCGGGCGCAGCGCCCGCGTCGCCGGGCTACGCTGGCGC CCACCGGGTGGCGGCGCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MRGVVARAENTAGPARAETRRGSPVDVRRWVLRLRRMATAYAVVAALGSLAIGSESVNCPTAVGGQSDIGQGGPGPRASR APRAAPTWWWPPAEPRPAVHEVAAVRGGIQLRQVAFDGRGAWADGPEAIRGYLEEALTRIGVTDASARGRWIDGMMTIAD HESQFHSAAINLADSNAYGPAQLDGGPLHATRGPWQLMPDTFAAFHQPGTSNSAWDPVAAACASMNYQMSRYGVSPDGSN QRLLVGQANPGIRQGY
Sequences:
>Translated_256_residues MRGVVARAENTAGPARAETRRGSPVDVRRWVLRLRRMATAYAVVAALGSLAIGSESVNCPTAVGGQSDIGQGGPGPRASR APRAAPTWWWPPAEPRPAVHEVAAVRGGIQLRQVAFDGRGAWADGPEAIRGYLEEALTRIGVTDASARGRWIDGMMTIAD HESQFHSAAINLADSNAYGPAQLDGGPLHATRGPWQLMPDTFAAFHQPGTSNSAWDPVAAACASMNYQMSRYGVSPDGSN QRLLVGQANPGIRQGY >Mature_256_residues MRGVVARAENTAGPARAETRRGSPVDVRRWVLRLRRMATAYAVVAALGSLAIGSESVNCPTAVGGQSDIGQGGPGPRASR APRAAPTWWWPPAEPRPAVHEVAAVRGGIQLRQVAFDGRGAWADGPEAIRGYLEEALTRIGVTDASARGRWIDGMMTIAD HESQFHSAAINLADSNAYGPAQLDGGPLHATRGPWQLMPDTFAAFHQPGTSNSAWDPVAAACASMNYQMSRYGVSPDGSN QRLLVGQANPGIRQGY
Specific function: Unknown
COG id: COG3953
COG function: function code R; SLT domain proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27104; Mature: 27104
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGVVARAENTAGPARAETRRGSPVDVRRWVLRLRRMATAYAVVAALGSLAIGSESVNCP CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TAVGGQSDIGQGGPGPRASRAPRAAPTWWWPPAEPRPAVHEVAAVRGGIQLRQVAFDGRG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCC AWADGPEAIRGYLEEALTRIGVTDASARGRWIDGMMTIADHESQFHSAAINLADSNAYGP CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHEEECCCCCCCC AQLDGGPLHATRGPWQLMPDTFAAFHQPGTSNSAWDPVAAACASMNYQMSRYGVSPDGSN CCCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCC QRLLVGQANPGIRQGY CEEEEECCCCCCCCCC >Mature Secondary Structure MRGVVARAENTAGPARAETRRGSPVDVRRWVLRLRRMATAYAVVAALGSLAIGSESVNCP CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TAVGGQSDIGQGGPGPRASRAPRAAPTWWWPPAEPRPAVHEVAAVRGGIQLRQVAFDGRG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCC AWADGPEAIRGYLEEALTRIGVTDASARGRWIDGMMTIADHESQFHSAAINLADSNAYGP CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHEEECCCCCCCC AQLDGGPLHATRGPWQLMPDTFAAFHQPGTSNSAWDPVAAACASMNYQMSRYGVSPDGSN CCCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCC QRLLVGQANPGIRQGY CEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA