| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409083
Identifier: 41409083
GI number: 41409083
Start: 3318264
End: 3320036
Strand: Direct
Name: 41409083
Synonym: MAP2985
Alternate gene names: NA
Gene position: 3318264-3320036 (Clockwise)
Preceding gene: 41409082
Following gene: 41409091
Centisome position: 68.7
GC content: 73.27
Gene sequence:
>1773_bases CTGGCCGCGTCGAGGAGCAACGATTGGGGGCCTGTGTCGGTGCCGGTCAGCAGCTTGGATCCGCGCGCCGGCAACGACCA CAGCGACCGCTCCGGTGCGCTGCGCGGCTGGCAGCGCCGGGCGCTGGTGAAATATCTCGCCGGGCAGCCCCGCGATTTCC TGGCGGTGGCGACCCCGGGCTCGGGCAAGACGACGTTCGCGCTGCGGGTGGCCGCCGAACTGCTCGGCCAGCGCGCCGTC GAGCAGGTCACCGTCGTGGTGCCCACCGAGCACCTCAAGGTGCAGTGGGCGCAGGCCGCGGCGCGGCACGGCCTGGCGCT GGACCCGCGGTTCTCCAACAGCAACCCGCGGATCGCGCCGGAGTACCACGGCGTGATGGTGACCTACGCTCAGGTCGCCG CGCACCCCACGCTGCACCGGGTGCGCACCGAGCAGCGCAGGACGCTGGTCATCTTCGACGAGATCCATCACGGCGGCGAC GCCAAGACGTGGGGCGATGCCATTCGCGAGGCGTTCGGCGACGCCACCCGCCGGCTCGCGTTGACGGGCACGCCGTTTCG CAGCGACGACAGCCCCATCCCGTTCGTGCGCTACGAGGCCGGACCCGACGGGGTGCGCCGCTCGCAGGCCAACCACACCT ACGGCTATCCCGAGGCGTTGGCCGACGGCGTGGTGCGGCCGGTGGTCTTTCTGGCCTACTCCGGGGAGGCACGCTGGCGC GACAGCGCCGGCGAGGAGCACGCGGCGCGGCTGGGCGAGCCGCTGTCGGCCGAGCAGACCGCGCGGGCCTGGCGCACCGC GCTGGACCCGGCCGGGGAATGGATGCCCGCGGTCATCGCGGCGGCCGACCAGCGGCTGCGCCAGCTGCGTGCCCACATTC CCGACGCCGGCGGCATGATCATCGCCTCCGACCGGGTCGCGGCCCGCGCCTACGCGACCCTGCTGACCAAGATCACCTCG GAGACGCCGACCGTGGTGCTCTCCGACGACCCCGGATCCTCGGCGCGCATCAGCGAATTCGCGGCGAGCACCAGCCGGTG GCTGGTGGCGGTGCGGATGGTCTCCGAGGGCGTCGACGTGCCGCGGCTGTCGGTCGGCATCTACGCCACCAGCGCCTCCA CGCCGCTGTTCTTCGCCCAGGCGGTCGGCCGGTTCGTGCGGTCGCGCCGCCCGGGCGAGACCGCGAGCATCTTCCTGCCG TCGGTGCCCAACCTGCTGCAACTGGCCAGCGAGCTGGAGGCCCAGCGCAACCACGTGCTGGGCGAGCCGCACCGCGTCTC CGAGGGCGACCCCCTCGACGGCGACCCGGCCACCCGCACGCAGAACGAGAAGAGCGAACTCGACAACGGCTTCACCTCGC TGGGGGCCGACGCGGAACTCGATCAGGTCATCTTCGACGGCTCGTCGTTCGGTACCGCCGCCCCGGCCGGCAGCGAGGAG GAGGCCGACTACCTCGGCATCCCGGGTTTGCTGGACGCCGAGCAGATGCGCGCCCTGCTGCACCAGCGCCAGGACGAGCA GCTGCAGCGGCGGGCCGGGCAGCCGTCGGCGGGCGACGCCCCGCCGGCGACGGTGCACGGCCAGCTGCGCGAGCTGCGCC GCGAGCTCAACACGCTGGTGTCGATCGCCCATCATCGAACGGGCAAGCCGCACGGCTGGATTCACAACGAGCTGCGGCGC CGCTGCGGCGGACCGCCGATCGCCGCGGCCAGCCGCGAACAGTTGCGGGCCCGCATCGACGCGGTGCGCCGGCTCAACGC CGAGCACTCCTGA
Upstream 100 bases:
>100_bases CTGCAGGCCCCGACGGCGGCCCGTCACCGCTAGCCGGTCGAGTCGCTCCCGCACCGAAAACCGTTGGCGTGCTAGATTTC ACAGCCGCCGCTCAATCGAG
Downstream 100 bases:
>100_bases CGGCCCATCACGGCCGCTAGTCGCCGACCGGTTCCTCGAGCACTTCCACGGCCGGACCGCCCAGCACCGTGAGCAGGCTT TGCTCGACGGCGCCGCGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 590; Mature: 589
Protein sequence:
>590_residues MAASRSNDWGPVSVPVSSLDPRAGNDHSDRSGALRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAV EQVTVVVPTEHLKVQWAQAAARHGLALDPRFSNSNPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFDEIHHGGD AKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHTYGYPEALADGVVRPVVFLAYSGEARWR DSAGEEHAARLGEPLSAEQTARAWRTALDPAGEWMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTKITS ETPTVVLSDDPGSSARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGETASIFLP SVPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTSLGADAELDQVIFDGSSFGTAAPAGSEE EADYLGIPGLLDAEQMRALLHQRQDEQLQRRAGQPSAGDAPPATVHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRR RCGGPPIAAASREQLRARIDAVRRLNAEHS
Sequences:
>Translated_590_residues MAASRSNDWGPVSVPVSSLDPRAGNDHSDRSGALRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAV EQVTVVVPTEHLKVQWAQAAARHGLALDPRFSNSNPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFDEIHHGGD AKTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHTYGYPEALADGVVRPVVFLAYSGEARWR DSAGEEHAARLGEPLSAEQTARAWRTALDPAGEWMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTKITS ETPTVVLSDDPGSSARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGETASIFLP SVPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTSLGADAELDQVIFDGSSFGTAAPAGSEE EADYLGIPGLLDAEQMRALLHQRQDEQLQRRAGQPSAGDAPPATVHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRR RCGGPPIAAASREQLRARIDAVRRLNAEHS >Mature_589_residues AASRSNDWGPVSVPVSSLDPRAGNDHSDRSGALRGWQRRALVKYLAGQPRDFLAVATPGSGKTTFALRVAAELLGQRAVE QVTVVVPTEHLKVQWAQAAARHGLALDPRFSNSNPRIAPEYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFDEIHHGGDA KTWGDAIREAFGDATRRLALTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHTYGYPEALADGVVRPVVFLAYSGEARWRD SAGEEHAARLGEPLSAEQTARAWRTALDPAGEWMPAVIAAADQRLRQLRAHIPDAGGMIIASDRVAARAYATLLTKITSE TPTVVLSDDPGSSARISEFAASTSRWLVAVRMVSEGVDVPRLSVGIYATSASTPLFFAQAVGRFVRSRRPGETASIFLPS VPNLLQLASELEAQRNHVLGEPHRVSEGDPLDGDPATRTQNEKSELDNGFTSLGADAELDQVIFDGSSFGTAAPAGSEEE ADYLGIPGLLDAEQMRALLHQRQDEQLQRRAGQPSAGDAPPATVHGQLRELRRELNTLVSIAHHRTGKPHGWIHNELRRR CGGPPIAAASREQLRARIDAVRRLNAEHS
Specific function: Unknown
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML1624 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR014001 - InterPro: IPR014021 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: NA
Molecular weight: Translated: 64050; Mature: 63919
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASRSNDWGPVSVPVSSLDPRAGNDHSDRSGALRGWQRRALVKYLAGQPRDFLAVATPG CCCCCCCCCCCEECCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC SGKTTFALRVAAELLGQRAVEQVTVVVPTEHLKVQWAQAAARHGLALDPRFSNSNPRIAP CCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC EYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFDEIHHGGDAKTWGDAIREAFGDATRRLA CCCCCEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEE LTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHTYGYPEALADGVVRPVVFLAYSGEARWR EECCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCC DSAGEEHAARLGEPLSAEQTARAWRTALDPAGEWMPAVIAAADQRLRQLRAHIPDAGGMI CCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE IASDRVAARAYATLLTKITSETPTVVLSDDPGSSARISEFAASTSRWLVAVRMVSEGVDV EECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC PRLSVGIYATSASTPLFFAQAVGRFVRSRRPGETASIFLPSVPNLLQLASELEAQRNHVL CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC GEPHRVSEGDPLDGDPATRTQNEKSELDNGFTSLGADAELDQVIFDGSSFGTAAPAGSEE CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCCCCHHHHEECCCCCCCCCCCCCCC EADYLGIPGLLDAEQMRALLHQRQDEQLQRRAGQPSAGDAPPATVHGQLRELRRELNTLV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH SIAHHRTGKPHGWIHNELRRRCGGPPIAAASREQLRARIDAVRRLNAEHS HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AASRSNDWGPVSVPVSSLDPRAGNDHSDRSGALRGWQRRALVKYLAGQPRDFLAVATPG CCCCCCCCCCEECCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC SGKTTFALRVAAELLGQRAVEQVTVVVPTEHLKVQWAQAAARHGLALDPRFSNSNPRIAP CCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC EYHGVMVTYAQVAAHPTLHRVRTEQRRTLVIFDEIHHGGDAKTWGDAIREAFGDATRRLA CCCCCEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEE LTGTPFRSDDSPIPFVRYEAGPDGVRRSQANHTYGYPEALADGVVRPVVFLAYSGEARWR EECCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCC DSAGEEHAARLGEPLSAEQTARAWRTALDPAGEWMPAVIAAADQRLRQLRAHIPDAGGMI CCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE IASDRVAARAYATLLTKITSETPTVVLSDDPGSSARISEFAASTSRWLVAVRMVSEGVDV EECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC PRLSVGIYATSASTPLFFAQAVGRFVRSRRPGETASIFLPSVPNLLQLASELEAQRNHVL CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC GEPHRVSEGDPLDGDPATRTQNEKSELDNGFTSLGADAELDQVIFDGSSFGTAAPAGSEE CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCCCCHHHHEECCCCCCCCCCCCCCC EADYLGIPGLLDAEQMRALLHQRQDEQLQRRAGQPSAGDAPPATVHGQLRELRRELNTLV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH SIAHHRTGKPHGWIHNELRRRCGGPPIAAASREQLRARIDAVRRLNAEHS HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]