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The map label for this gene is ycdK [C]

Identifier: 41408919

GI number: 41408919

Start: 3150266

End: 3150673

Strand: Direct

Name: ycdK [C]

Synonym: MAP2821

Alternate gene names: 41408919

Gene position: 3150266-3150673 (Clockwise)

Preceding gene: 41408918

Following gene: 41408920

Centisome position: 65.23

GC content: 72.06

Gene sequence:

>408_bases
ATGTCAACCAGCCGCACCGTGGTCCAATCCGACTCAGCCTTCGAATCCGACGTCGGCTACGCGCGGGCGGTGCGCGTCGG
CCCGCACGTCTGGGTCGCCGGGACAACCGGCGCCGGGCCCGCCGGCGATATCGCCGCCCAAGCGCGAGATGCTTTGCGCC
GCATCGAGATTGCGCTGCACCAGGCGGGCGCGGCGCTCGCCGATGTGGTGCGCAACCGGATCTACGTCACCGACATCTCG
CGCTGGCGCGAGGTCGGGGCGGTGCACGCGGAGGTGTTCGGCGCGATACGGCCCGCGGCCACCATGGTCGAGGTCTCGGC
GCTGATCGCGCCCGAGTTGCTGGTGGAGATCGAAGCCGACGCCTACGTGGCGACGGGCGGGAAGCCGCCGTCGGGTCCCG
GCCGGTAG

Upstream 100 bases:

>100_bases
GTCCGGGCGGAACGCACCGGAAGCGTTGCCGCCCAAGGCAATTCAGCCAGGTGTGAAAAATGCGTGGCCCCGGCGGTGTC
GCCGACGTACCGTGAGGCGC

Downstream 100 bases:

>100_bases
TCGGTGACCGCGATCACAGCGGCTCACCGGCAGCGGCCCGTACAGATGCGGGAACAACATCGATGCGGGATCGGTTGGCA
CTCCCGGCTCCCAAAGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSTSRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALHQAGAALADVVRNRIYVTDIS
RWREVGAVHAEVFGAIRPAATMVEVSALIAPELLVEIEADAYVATGGKPPSGPGR

Sequences:

>Translated_135_residues
MSTSRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALHQAGAALADVVRNRIYVTDIS
RWREVGAVHAEVFGAIRPAATMVEVSALIAPELLVEIEADAYVATGGKPPSGPGR
>Mature_134_residues
STSRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALHQAGAALADVVRNRIYVTDISR
WREVGAVHAEVFGAIRPAATMVEVSALIAPELLVEIEADAYVATGGKPPSGPGR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14060; Mature: 13929

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALH
CCCCCCEEECCCCCHHCCCHHEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
QAGAALADVVRNRIYVTDISRWREVGAVHAEVFGAIRPAATMVEVSALIAPELLVEIEAD
HCCHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHEEEECCC
AYVATGGKPPSGPGR
EEEEECCCCCCCCCC
>Mature Secondary Structure 
STSRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALH
CCCCCEEECCCCCHHCCCHHEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
QAGAALADVVRNRIYVTDISRWREVGAVHAEVFGAIRPAATMVEVSALIAPELLVEIEAD
HCCHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHEEEECCC
AYVATGGKPPSGPGR
EEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]