| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is yfcA [C]
Identifier: 41408841
GI number: 41408841
Start: 3074503
End: 3075288
Strand: Reverse
Name: yfcA [C]
Synonym: MAP2743c
Alternate gene names: 41408841
Gene position: 3075288-3074503 (Counterclockwise)
Preceding gene: 41408842
Following gene: 41408839
Centisome position: 63.67
GC content: 71.37
Gene sequence:
>786_bases GTGTCGCCATTTCAGATGTTCGTCATATGCCTGGCCGGGCTGGCCGCCGGTGCGATCAACGCGCTGGTCGGGTCCGGCAC CCTGATCACCTTCCCGACGCTGGTGGCGCTCGGCTATCCGCCGGTGACGGCCACCATGTCCAACGCCACCGGCCTGGTCG CCGGCAGCGTCTCGGGCACCTGGGGCTATCGCGCCGAGCTGCGCGGTCAGTGGGACCGGCTGCGCTGGCAGCTGCCGGCC TCGCTGGCCGGCGCCGGGCTGGGCGCCTATCTGCTGCTGCATCTGCCGGAGAAGGTGTTCGCCGAGATCGTGCCGGTGCT GCTGGTGGCGGCGCTGGTCCTGGTGGTGACCGGACCGCGGATCCAGGCGTGGACGGCCCGGCGCGCCGAGCAGGCGGGCC GCTCACCCGAACACGTGCCACCCGGGCGGATGGCGACGCTGGTGTTCGGCACCTTCGCCGTCGGCGTCTATGGCGGCTAT TTCACTGCCGCCCAGGGCATTTTGCTGGTCGGCCTGATGGGGGCACTGCTGCCCGAATCGGTGCAGCGGATGAACGCCGC CAAGAATCTGCTGGCCCTGGTGGTGAATGTGGTTGCGGCGGTTGCCTATACGTCGGTGGCGTTCGGCCGGATCAGCTGGG CGGCGGCCGGGCTGATCGCGGCGGGCTCGCTGGTCGGCGGGCTGCTCGGCGCCCGGTACGGGCGCCGGCTGTCCGGCGGC GCGCTGCGGGCCATCATCGTTGTGGTGGGGCTGATCGGGCTCTACCGACTGCTCGCGGTGGCATGA
Upstream 100 bases:
>100_bases AGTTGCGGACCGGGGTGGATCGCGGCGCGCAAGCCCCGCCGGTGTGACCTTGGCCCCTTGGTCTGCGCCGAAATCGGCGG CAGGCTAAGGTTTTTCTCCG
Downstream 100 bases:
>100_bases CGAAACAGCCGCTGCAGCAAAGGTTTTGGTGCTACCCGGTGCTCACCAGCGGTCGGCGCCGGACAGCGCGGAGTCGACCG TGGGGTAGATCGGCAGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: Permease
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSPFQMFVICLAGLAAGAINALVGSGTLITFPTLVALGYPPVTATMSNATGLVAGSVSGTWGYRAELRGQWDRLRWQLPA SLAGAGLGAYLLLHLPEKVFAEIVPVLLVAALVLVVTGPRIQAWTARRAEQAGRSPEHVPPGRMATLVFGTFAVGVYGGY FTAAQGILLVGLMGALLPESVQRMNAAKNLLALVVNVVAAVAYTSVAFGRISWAAAGLIAAGSLVGGLLGARYGRRLSGG ALRAIIVVVGLIGLYRLLAVA
Sequences:
>Translated_261_residues MSPFQMFVICLAGLAAGAINALVGSGTLITFPTLVALGYPPVTATMSNATGLVAGSVSGTWGYRAELRGQWDRLRWQLPA SLAGAGLGAYLLLHLPEKVFAEIVPVLLVAALVLVVTGPRIQAWTARRAEQAGRSPEHVPPGRMATLVFGTFAVGVYGGY FTAAQGILLVGLMGALLPESVQRMNAAKNLLALVVNVVAAVAYTSVAFGRISWAAAGLIAAGSLVGGLLGARYGRRLSGG ALRAIIVVVGLIGLYRLLAVA >Mature_260_residues SPFQMFVICLAGLAAGAINALVGSGTLITFPTLVALGYPPVTATMSNATGLVAGSVSGTWGYRAELRGQWDRLRWQLPAS LAGAGLGAYLLLHLPEKVFAEIVPVLLVAALVLVVTGPRIQAWTARRAEQAGRSPEHVPPGRMATLVFGTFAVGVYGGYF TAAQGILLVGLMGALLPESVQRMNAAKNLLALVVNVVAAVAYTSVAFGRISWAAAGLIAAGSLVGGLLGARYGRRLSGGA LRAIIVVVGLIGLYRLLAVA
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26862; Mature: 26731
Theoretical pI: Translated: 11.05; Mature: 11.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFQMFVICLAGLAAGAINALVGSGTLITFPTLVALGYPPVTATMSNATGLVAGSVSGT CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCC WGYRAELRGQWDRLRWQLPASLAGAGLGAYLLLHLPEKVFAEIVPVLLVAALVLVVTGPR CCCHHHHCCCHHHHHHHCCHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC IQAWTARRAEQAGRSPEHVPPGRMATLVFGTFAVGVYGGYFTAAQGILLVGLMGALLPES HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQRMNAAKNLLALVVNVVAAVAYTSVAFGRISWAAAGLIAAGSLVGGLLGARYGRRLSGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH ALRAIIVVVGLIGLYRLLAVA HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SPFQMFVICLAGLAAGAINALVGSGTLITFPTLVALGYPPVTATMSNATGLVAGSVSGT CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCC WGYRAELRGQWDRLRWQLPASLAGAGLGAYLLLHLPEKVFAEIVPVLLVAALVLVVTGPR CCCHHHHCCCHHHHHHHCCHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC IQAWTARRAEQAGRSPEHVPPGRMATLVFGTFAVGVYGGYFTAAQGILLVGLMGALLPES HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQRMNAAKNLLALVVNVVAAVAYTSVAFGRISWAAAGLIAAGSLVGGLLGARYGRRLSGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH ALRAIIVVVGLIGLYRLLAVA HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA