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The map label for this gene is yjiR [C]

Identifier: 41408730

GI number: 41408730

Start: 2966094

End: 2966459

Strand: Reverse

Name: yjiR [C]

Synonym: MAP2632c

Alternate gene names: 41408730

Gene position: 2966459-2966094 (Counterclockwise)

Preceding gene: 41408732

Following gene: 41408728

Centisome position: 61.42

GC content: 71.86

Gene sequence:

>366_bases
GTGGAGCTGGGTGACTGGTTGCGGGTCGACATGAAGGCGGGCAAGCCGCTTTTCGACCAGCTCAGGACGCAGGTGATCGA
GGGGGTGCGCGAGGGCGCGCTGCCACCCGGCACCCGGCTGCCCACCGTGCGGGAGCTGGCCGGCCAGCTCGGCGTCGCCG
TCAACACCGTGGCCCGCGGCTACCGCGAGCTGGAATCGGCCGCCATCATCGAAACCCGGGGCCGCTTCGGCACTTTCGTC
GCCCGCTACGACCCCACCGACGCCGCGATGGCGGCCGCGGCCCGAGAGTACGTCCGGGTGGCACGCGGCCTGGGGTTGGA
CAAGGCGGACGCCGTGCGCTACATCGAATCGGTGCCCGACGAGTGA

Upstream 100 bases:

>100_bases
GCGGAAGGTCGGCACCCCGCTCTCCGCGGAGATGCCCGCGCCGCTGAGCACCGCTATGCGCATCCCACCAAGATAGCCGC
GGCTGAGCGATACTGAACGA

Downstream 100 bases:

>100_bases
GAAGCCCGGCCGGGGGCTGAAAAACCTTGCCGCCGTGGGGTTTTGCGACGGCTAGCTCAACACCTTGACCAGGGTGCGCA
GATTGCGGGTGGTGGTCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator; Transcriptional Regulator-Like Protein; Gntr Family Transcriptional Regulator; Transcriptional Regulatory Protein

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARGYRELESAAIIETRGRFGTFV
ARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPDE

Sequences:

>Translated_121_residues
MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARGYRELESAAIIETRGRFGTFV
ARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPDE
>Mature_121_residues
MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARGYRELESAAIIETRGRFGTFV
ARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPDE

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13218; Mature: 13218

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARG
CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YRELESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPD
HHHHHHHHHHHCCCCHHHHHEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
E
C
>Mature Secondary Structure
MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARG
CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YRELESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPD
HHHHHHHHHHHCCCCHHHHHEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA